| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209696307
Identifier: 209696307
GI number: 209696307
Start: 3153432
End: 3153764
Strand: Direct
Name: 209696307
Synonym: VSAL_I2909
Alternate gene names: NA
Gene position: 3153432-3153764 (Clockwise)
Preceding gene: 209696304
Following gene: 209696308
Centisome position: 94.84
GC content: 36.94
Gene sequence:
>333_bases ATGCCAGTTATTTATATCGTTACGCTATTTATTTTCATCCTCATCGCTGCGGTATTATTTAAGCGCTTTCAAAGTAAATA CATGCTTGGCGAAAATGCCCCTGAGATGAAAACAGAAGTGACTATTCTTGATAAACAGATCATTGAGATTACCGATGCCC AACCTGGAGAAGAAGGACAAGAGTTTTGGATTTATGTACAGAAAGGAAATTTTGGCCCCAAAAGAGAATTTGAAGTAGGC ATTCATTTTTTTAATGCTCTAAACCCTGGCGATAAAGGTATAATGACTTATCAAGGACGTAAGTTTCATCACTTTGCGTT AAAGCGAGACTAA
Upstream 100 bases:
>100_bases AAATAGAAAACCCCCACACTCTCGACAAATAGTCATTATCTCCTCTTTATAGAAACGGTAGAATAAAGCGTATTTATCAC TCGTAAGTTTAAGGACAACC
Downstream 100 bases:
>100_bases TTTCAGGGACACATATGACCAACCAATTACTTTCAGCCACCCCATTAACCTCTCTGGCTGGTGTCGGCGCGAAAGTAGCC GAAAAGCTGGCTAAAATTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 110; Mature: 109
Protein sequence:
>110_residues MPVIYIVTLFIFILIAAVLFKRFQSKYMLGENAPEMKTEVTILDKQIIEITDAQPGEEGQEFWIYVQKGNFGPKREFEVG IHFFNALNPGDKGIMTYQGRKFHHFALKRD
Sequences:
>Translated_110_residues MPVIYIVTLFIFILIAAVLFKRFQSKYMLGENAPEMKTEVTILDKQIIEITDAQPGEEGQEFWIYVQKGNFGPKREFEVG IHFFNALNPGDKGIMTYQGRKFHHFALKRD >Mature_109_residues PVIYIVTLFIFILIAAVLFKRFQSKYMLGENAPEMKTEVTILDKQIIEITDAQPGEEGQEFWIYVQKGNFGPKREFEVGI HFFNALNPGDKGIMTYQGRKFHHFALKRD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12801; Mature: 12670
Theoretical pI: Translated: 7.77; Mature: 7.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVIYIVTLFIFILIAAVLFKRFQSKYMLGENAPEMKTEVTILDKQIIEITDAQPGEEGQ CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHEEEECCCCCCCCCC EFWIYVQKGNFGPKREFEVGIHFFNALNPGDKGIMTYQGRKFHHFALKRD EEEEEEEECCCCCCCCHHEEEEEEECCCCCCCCEEEECCCEEEEEEEECC >Mature Secondary Structure PVIYIVTLFIFILIAAVLFKRFQSKYMLGENAPEMKTEVTILDKQIIEITDAQPGEEGQ CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHEEEECCCCCCCCCC EFWIYVQKGNFGPKREFEVGIHFFNALNPGDKGIMTYQGRKFHHFALKRD EEEEEEEECCCCCCCCHHEEEEEEECCCCCCCCEEEECCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA