| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209696306
Identifier: 209696306
GI number: 209696306
Start: 3152793
End: 3153158
Strand: Reverse
Name: 209696306
Synonym: VSAL_I2908
Alternate gene names: NA
Gene position: 3153158-3152793 (Counterclockwise)
Preceding gene: 209696309
Following gene: 209696305
Centisome position: 94.83
GC content: 33.61
Gene sequence:
>366_bases ATGTCGGATATTGATCTTGTGGTAAAACAAAGCAGGAAAATAGAATCGTTATTAAAAATGCATTATCACGCTGAAGGTAA AGGCTTACATCAACTGATCAGTAGTTGTGAAGAGCGGTTACCACACGATGTAATTAAAAAATTACGCTTTATAGCTACGA TAAGAAATAAAGTGGTGCATGAAGATGGGTATAAATTAGAGGATAAAGCAGGTTTTAAGAGTGCTAGCCAAGAATCAATT GATATTTTGACACCTAGAGCGAGCCGCTTTCTTTGGAAACTAGTTTTCTTTATTGTGTTGTTTTCTACGTTAATTTCAGT TGGTATCTATTTGATTCACTGGGATAATATTAAGAATCTATTCTAA
Upstream 100 bases:
>100_bases GAAAAGCGTTTTTATAAGTATAAAAATAAAGGTTATCTGTGTGTTTGATTTTCAATTCGAGTACAGTAGAAAGAATAAAG TGAGTCGCTAGGAGAGTGAA
Downstream 100 bases:
>100_bases TATCTTCTTTTCTGGTATAAAAAAACGGACGCAAATGCGTCCGTTTTTTTATATAAACTTATTTGAATGTATATTAGTAC ATCATTGGCAGAGTCATTAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 121; Mature: 120
Protein sequence:
>121_residues MSDIDLVVKQSRKIESLLKMHYHAEGKGLHQLISSCEERLPHDVIKKLRFIATIRNKVVHEDGYKLEDKAGFKSASQESI DILTPRASRFLWKLVFFIVLFSTLISVGIYLIHWDNIKNLF
Sequences:
>Translated_121_residues MSDIDLVVKQSRKIESLLKMHYHAEGKGLHQLISSCEERLPHDVIKKLRFIATIRNKVVHEDGYKLEDKAGFKSASQESI DILTPRASRFLWKLVFFIVLFSTLISVGIYLIHWDNIKNLF >Mature_120_residues SDIDLVVKQSRKIESLLKMHYHAEGKGLHQLISSCEERLPHDVIKKLRFIATIRNKVVHEDGYKLEDKAGFKSASQESID ILTPRASRFLWKLVFFIVLFSTLISVGIYLIHWDNIKNLF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14068; Mature: 13936
Theoretical pI: Translated: 9.80; Mature: 9.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDIDLVVKQSRKIESLLKMHYHAEGKGLHQLISSCEERLPHDVIKKLRFIATIRNKVVH CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH EDGYKLEDKAGFKSASQESIDILTPRASRFLWKLVFFIVLFSTLISVGIYLIHWDNIKNL CCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHCC F C >Mature Secondary Structure SDIDLVVKQSRKIESLLKMHYHAEGKGLHQLISSCEERLPHDVIKKLRFIATIRNKVVH CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH EDGYKLEDKAGFKSASQESIDILTPRASRFLWKLVFFIVLFSTLISVGIYLIHWDNIKNL CCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHCC F C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA