Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209696306

Identifier: 209696306

GI number: 209696306

Start: 3152793

End: 3153158

Strand: Reverse

Name: 209696306

Synonym: VSAL_I2908

Alternate gene names: NA

Gene position: 3153158-3152793 (Counterclockwise)

Preceding gene: 209696309

Following gene: 209696305

Centisome position: 94.83

GC content: 33.61

Gene sequence:

>366_bases
ATGTCGGATATTGATCTTGTGGTAAAACAAAGCAGGAAAATAGAATCGTTATTAAAAATGCATTATCACGCTGAAGGTAA
AGGCTTACATCAACTGATCAGTAGTTGTGAAGAGCGGTTACCACACGATGTAATTAAAAAATTACGCTTTATAGCTACGA
TAAGAAATAAAGTGGTGCATGAAGATGGGTATAAATTAGAGGATAAAGCAGGTTTTAAGAGTGCTAGCCAAGAATCAATT
GATATTTTGACACCTAGAGCGAGCCGCTTTCTTTGGAAACTAGTTTTCTTTATTGTGTTGTTTTCTACGTTAATTTCAGT
TGGTATCTATTTGATTCACTGGGATAATATTAAGAATCTATTCTAA

Upstream 100 bases:

>100_bases
GAAAAGCGTTTTTATAAGTATAAAAATAAAGGTTATCTGTGTGTTTGATTTTCAATTCGAGTACAGTAGAAAGAATAAAG
TGAGTCGCTAGGAGAGTGAA

Downstream 100 bases:

>100_bases
TATCTTCTTTTCTGGTATAAAAAAACGGACGCAAATGCGTCCGTTTTTTTATATAAACTTATTTGAATGTATATTAGTAC
ATCATTGGCAGAGTCATTAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 121; Mature: 120

Protein sequence:

>121_residues
MSDIDLVVKQSRKIESLLKMHYHAEGKGLHQLISSCEERLPHDVIKKLRFIATIRNKVVHEDGYKLEDKAGFKSASQESI
DILTPRASRFLWKLVFFIVLFSTLISVGIYLIHWDNIKNLF

Sequences:

>Translated_121_residues
MSDIDLVVKQSRKIESLLKMHYHAEGKGLHQLISSCEERLPHDVIKKLRFIATIRNKVVHEDGYKLEDKAGFKSASQESI
DILTPRASRFLWKLVFFIVLFSTLISVGIYLIHWDNIKNLF
>Mature_120_residues
SDIDLVVKQSRKIESLLKMHYHAEGKGLHQLISSCEERLPHDVIKKLRFIATIRNKVVHEDGYKLEDKAGFKSASQESID
ILTPRASRFLWKLVFFIVLFSTLISVGIYLIHWDNIKNLF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14068; Mature: 13936

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDIDLVVKQSRKIESLLKMHYHAEGKGLHQLISSCEERLPHDVIKKLRFIATIRNKVVH
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EDGYKLEDKAGFKSASQESIDILTPRASRFLWKLVFFIVLFSTLISVGIYLIHWDNIKNL
CCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHCC
F
C
>Mature Secondary Structure 
SDIDLVVKQSRKIESLLKMHYHAEGKGLHQLISSCEERLPHDVIKKLRFIATIRNKVVH
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EDGYKLEDKAGFKSASQESIDILTPRASRFLWKLVFFIVLFSTLISVGIYLIHWDNIKNL
CCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHCC
F
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA