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The map label for this gene is rsmD [H]

Identifier: 209696303

GI number: 209696303

Start: 3149997

End: 3150605

Strand: Direct

Name: rsmD [H]

Synonym: VSAL_I2904

Alternate gene names: 209696303

Gene position: 3149997-3150605 (Clockwise)

Preceding gene: 209696296

Following gene: 209696304

Centisome position: 94.73

GC content: 39.41

Gene sequence:

>609_bases
ATGCTTAAACGTAAACAACATTCATCTCGCACTTCTAACACAAATAGAGCCTCTGGAAGTATCCGAATCATCAGCGGACG
CTGGCGTGGACGTAAACTTCCAGTGCATGATGCAGAAGGATTAAGACCCACAACTGATCGCATAAAAGAAACCGTATTTA
ATTGGTTAGCCCTTGATATTCCTCGTTCTCGTTGTTTGGATCTATTTTCTGGTAGCGGTGGTTTAGGATTTGAAGCGGCC
TCTCGTGGAGCTGAACACGTTGTGATGCTTGAATTAAACAAACAAGCTCATACCCAATTAAAACAAAATGCAGAAAGCCT
AAAAGCCGATAATATAGAACTTCATCATATCGATGCATTAGCGTATTTAAACCAAACTCCCACGCCATTCCCATTTGATG
TGGTCTTTATTGATCCTCCTTTTAGAAAAGACCTACTAGAAGAAACATTAACTAAATTAGAACAAAATGGTTGGCTTACT
AAAAACGCAATGATTTACATTGAAGCGGAAAAAGAACTAAGCTCATTGCCAACGCCTGCTCATTGGCGATTGCATAGAGA
TAAAACCGCAGGACAAGTTACATTTAAACTATATGAAAGAGAGGAATAG

Upstream 100 bases:

>100_bases
CAATAATCCGCGTTTCTTTTTGCCTGTCATTGAGAAATCCTAGAATTAAATTGGTACCATTTTCTCGTATACTATCACTT
TCTTAGCGGTCAAAAAATCT

Downstream 100 bases:

>100_bases
ATGAAAGGACTGATCATTCTTGCCAAAGCAGCCATAGGGTTTGTTTGGCTAATTTTATTATTAAATATTTTTATGCCTTT
CCCAGGAAAAGCAGCCATTG

Product: hypothetical protein

Products: NA

Alternate protein names: 16S rRNA m2G966 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase [H]

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MLKRKQHSSRTSNTNRASGSIRIISGRWRGRKLPVHDAEGLRPTTDRIKETVFNWLALDIPRSRCLDLFSGSGGLGFEAA
SRGAEHVVMLELNKQAHTQLKQNAESLKADNIELHHIDALAYLNQTPTPFPFDVVFIDPPFRKDLLEETLTKLEQNGWLT
KNAMIYIEAEKELSSLPTPAHWRLHRDKTAGQVTFKLYEREE

Sequences:

>Translated_202_residues
MLKRKQHSSRTSNTNRASGSIRIISGRWRGRKLPVHDAEGLRPTTDRIKETVFNWLALDIPRSRCLDLFSGSGGLGFEAA
SRGAEHVVMLELNKQAHTQLKQNAESLKADNIELHHIDALAYLNQTPTPFPFDVVFIDPPFRKDLLEETLTKLEQNGWLT
KNAMIYIEAEKELSSLPTPAHWRLHRDKTAGQVTFKLYEREE
>Mature_202_residues
MLKRKQHSSRTSNTNRASGSIRIISGRWRGRKLPVHDAEGLRPTTDRIKETVFNWLALDIPRSRCLDLFSGSGGLGFEAA
SRGAEHVVMLELNKQAHTQLKQNAESLKADNIELHHIDALAYLNQTPTPFPFDVVFIDPPFRKDLLEETLTKLEQNGWLT
KNAMIYIEAEKELSSLPTPAHWRLHRDKTAGQVTFKLYEREE

Specific function: Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=201, Percent_Identity=51.7412935323383, Blast_Score=211, Evalue=4e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: =2.1.1.171 [H]

Molecular weight: Translated: 23084; Mature: 23084

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKRKQHSSRTSNTNRASGSIRIISGRWRGRKLPVHDAEGLRPTTDRIKETVFNWLALDI
CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
PRSRCLDLFSGSGGLGFEAASRGAEHVVMLELNKQAHTQLKQNAESLKADNIELHHIDAL
CHHHHHHHHCCCCCCCHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEHHH
AYLNQTPTPFPFDVVFIDPPFRKDLLEETLTKLEQNGWLTKNAMIYIEAEKELSSLPTPA
HHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEECCEEEEEEECHHHHCCCCCC
HWRLHRDKTAGQVTFKLYEREE
CEEEECCCCCCEEEEEEEECCC
>Mature Secondary Structure
MLKRKQHSSRTSNTNRASGSIRIISGRWRGRKLPVHDAEGLRPTTDRIKETVFNWLALDI
CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
PRSRCLDLFSGSGGLGFEAASRGAEHVVMLELNKQAHTQLKQNAESLKADNIELHHIDAL
CHHHHHHHHCCCCCCCHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEHHH
AYLNQTPTPFPFDVVFIDPPFRKDLLEETLTKLEQNGWLTKNAMIYIEAEKELSSLPTPA
HHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEECCEEEEEEECHHHHCCCCCC
HWRLHRDKTAGQVTFKLYEREE
CEEEECCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]