| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209696296
Identifier: 209696296
GI number: 209696296
Start: 3143925
End: 3144335
Strand: Direct
Name: 209696296
Synonym: VSAL_I2897
Alternate gene names: NA
Gene position: 3143925-3144335 (Clockwise)
Preceding gene: 209696293
Following gene: 209696303
Centisome position: 94.55
GC content: 37.71
Gene sequence:
>411_bases ATGACAAAGAAATCATTATTTGCAGGACTACTGCTAATTATTAGCCAACTTTTTGCTCCTGCTGTTTTAGCAGCAGACGA AACGACACCTAAAATGGGTTACTTCACCTTAGCACCCGATCTAACCACTAATTTTGTTACTACAGGGAAAAAGCTCGGAT ACATACAAGTTCGCATCGACATTATGGTTGCCGATAATCGTGAAGTTCCACTTCTAGAGCATCATAATCCACAAATCCGT AATGTATTAGTTGAAGTCTTTGGACAACAACCTGAGAACCGAATTAAATCATTGGCTGGTCGTGAAGAAATCAGAAAAGA ATGCTTAACGGCAATTAATGAACTGCTGCTTGCTGAGACAGGAAAAACATTAGCTGTGGATTTATTGTTTACTAAATATA TCTACCAATAA
Upstream 100 bases:
>100_bases ATATATCAATAATATTGAGAGATTACGGTTAATTTTTTCTCACAACGGCCGACTATTGTAACAAGTAATAAAATAAATTG ACGGATGAATGGATTAGAAA
Downstream 100 bases:
>100_bases AGAAAAAAATAGGGCAAGAGATAATCTTCTTGCTCTATTTTTATTTCGTTTTATTACGCTTTTTTAAACTTGAATTGACT GTCAATTGCTGCAAAAGCAC
Product: flagellar basal body-associated protein FliL-like protein
Products: NA
Alternate protein names: Flagellar Basal Body-Associated Protein FliL; Flagellar Protein FliL; Flagellar Biosynthesis Protein FliL
Number of amino acids: Translated: 136; Mature: 135
Protein sequence:
>136_residues MTKKSLFAGLLLIISQLFAPAVLAADETTPKMGYFTLAPDLTTNFVTTGKKLGYIQVRIDIMVADNREVPLLEHHNPQIR NVLVEVFGQQPENRIKSLAGREEIRKECLTAINELLLAETGKTLAVDLLFTKYIYQ
Sequences:
>Translated_136_residues MTKKSLFAGLLLIISQLFAPAVLAADETTPKMGYFTLAPDLTTNFVTTGKKLGYIQVRIDIMVADNREVPLLEHHNPQIR NVLVEVFGQQPENRIKSLAGREEIRKECLTAINELLLAETGKTLAVDLLFTKYIYQ >Mature_135_residues TKKSLFAGLLLIISQLFAPAVLAADETTPKMGYFTLAPDLTTNFVTTGKKLGYIQVRIDIMVADNREVPLLEHHNPQIRN VLVEVFGQQPENRIKSLAGREEIRKECLTAINELLLAETGKTLAVDLLFTKYIYQ
Specific function: Unknown
COG id: COG1580
COG function: function code N; Flagellar basal body-associated protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15261; Mature: 15130
Theoretical pI: Translated: 7.51; Mature: 7.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKKSLFAGLLLIISQLFAPAVLAADETTPKMGYFTLAPDLTTNFVTTGKKLGYIQVRID CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHCCCCCEEEEEEEE IMVADNREVPLLEHHNPQIRNVLVEVFGQQPENRIKSLAGREEIRKECLTAINELLLAET EEEECCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC GKTLAVDLLFTKYIYQ CCHHHHHHHHHHHHCC >Mature Secondary Structure TKKSLFAGLLLIISQLFAPAVLAADETTPKMGYFTLAPDLTTNFVTTGKKLGYIQVRID CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHCCCCCEEEEEEEE IMVADNREVPLLEHHNPQIRNVLVEVFGQQPENRIKSLAGREEIRKECLTAINELLLAET EEEECCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC GKTLAVDLLFTKYIYQ CCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA