| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209696220
Identifier: 209696220
GI number: 209696220
Start: 3050102
End: 3051352
Strand: Reverse
Name: 209696220
Synonym: VSAL_I2816
Alternate gene names: NA
Gene position: 3051352-3050102 (Counterclockwise)
Preceding gene: 209696221
Following gene: 209696211
Centisome position: 91.77
GC content: 39.89
Gene sequence:
>1251_bases TTGTTTTTTTTAAGGTCTTTTCATTTTATTAGGTTTTCTATTATGTTTTCTCAATTTAGCCATAACGTTCGACAGTATAT GTTGGTGACGTTTAATTATTGGAATTTCACTATTACTGATGGCGCATTGCGTATGTTGGTGGTGCTGTATTTTCATGATT TAGGTTATGGCACCTTAGCCATTGCTTCTCTCTTTTTATTTTATGAATTTTTTGGTGTCGTAACGAATTTACTCGGAGGG TGGTTAGGGGCTCGGTTAGGGCTAAATAAAACCATGAATGTGGGTTTGATAATGCAAGTTTTTGCATTATTGATGCTGGC ATTACCGAGTGTTTGGTTAACTATCCCATGGGTGATGGCAGCACAAGCATTATCAGGTATTGCTAAAGATCTGAATAAGA TGAGTGCAAAAAGTGCGATTAAAACATTGGTGCCTAGCGATCAAGAAGGGGCGCTCTATAAGTGGATAGCGATTCTTACG GGTTCTAAAAATGCGCTTAAAGGGGCCGGGTTCTTTTTAGGTGGATTACTATTAACGACGGTTGGATTTCAGCTTGCCGT TATTGGGATGGCAGCGGTTCTTTTTGCTGTTTTTCTTGGTAGCGTAATGTTGCTTGATGGTGACATGGGAAAAGCAAAGT CCAAACCTAAATTTACGCAGTTATTTTCAAAATCAGAACAGATTAATCGGTTATCAGCGGCACGTTTATTTTTGTTTGGT GCAAGAGATGTTTGGTTTGTCGTTGCTTTACCGATTTATTTAGGCAGTGTGTTTGGTTGGGATCACTCTTTAGTGGGTGG TTTTTTAGCATTGTGGGTTATTGCTTATGGGTTTGTTCAAGGATTTGCTCCTAAGATAACAGGTAAAAAAGAAGGCCGAA CCCCTGATGGCAGAGCGGCATTACATTGGGTTGCGCTGTTAACGATAGTCACGGGGATTATTGCGTATCTAGTGCAAGTT GAGTGGCAAGCTGAATATACGATCGTGATTGGTTTATTGATGTTTGGGGCTGTATTTGCGGTTAATTCGTCATTACATTC GTACTTGATTGTGAGTTACGCCAAAGGCGATGGTGTTTCTGTGGATGTCGGTTTTTATTATATGGCGAATGCGATGGGAC GTTTGATCGGAACGATTTTATCTGGACTAGTCTTTCAAGTGGCAGGTTTTGCAGCGTGTTTGTGGGTATCTTTCGGTTTC TTGCTTCTATCTACGCTGATATCAATTAAATTACCTAAAAATACAGAATGA
Upstream 100 bases:
>100_bases AGTTCAAGCGTTACGTCCGGGGGCTTTCACTAAGCCTGTGCAAATTGAATACATTGATTTTATTGCTCACAAATAATCTG CATTAACAAAGACCTTAATA
Downstream 100 bases:
>100_bases CGTTAATAGAGATTAAATCATTAAAATGGACTTTCTTTCTGTAATTCTGCACAAATATCGACAATTGCTAATGACAGACC AGAACGGATCATTTGTTTTT
Product: MFS transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Facilitator Superfamily Permease; Facilitator Superfamily Multidrug-Efflux Transporter; Membrane Transporter; Facilitator Superfamily Transporter; Multidrug Efflux Transporter MFS Family; Multidrug-Efflux Transporter; Nonfunctional Facilitator Superfamily Protein; MFS Transporter; Transporter-Like Protein; Permease Of Facilitator Superfamily; Nitric Oxide Reductase Cytochrome B Subunit
Number of amino acids: Translated: 416; Mature: 416
Protein sequence:
>416_residues MFFLRSFHFIRFSIMFSQFSHNVRQYMLVTFNYWNFTITDGALRMLVVLYFHDLGYGTLAIASLFLFYEFFGVVTNLLGG WLGARLGLNKTMNVGLIMQVFALLMLALPSVWLTIPWVMAAQALSGIAKDLNKMSAKSAIKTLVPSDQEGALYKWIAILT GSKNALKGAGFFLGGLLLTTVGFQLAVIGMAAVLFAVFLGSVMLLDGDMGKAKSKPKFTQLFSKSEQINRLSAARLFLFG ARDVWFVVALPIYLGSVFGWDHSLVGGFLALWVIAYGFVQGFAPKITGKKEGRTPDGRAALHWVALLTIVTGIIAYLVQV EWQAEYTIVIGLLMFGAVFAVNSSLHSYLIVSYAKGDGVSVDVGFYYMANAMGRLIGTILSGLVFQVAGFAACLWVSFGF LLLSTLISIKLPKNTE
Sequences:
>Translated_416_residues MFFLRSFHFIRFSIMFSQFSHNVRQYMLVTFNYWNFTITDGALRMLVVLYFHDLGYGTLAIASLFLFYEFFGVVTNLLGG WLGARLGLNKTMNVGLIMQVFALLMLALPSVWLTIPWVMAAQALSGIAKDLNKMSAKSAIKTLVPSDQEGALYKWIAILT GSKNALKGAGFFLGGLLLTTVGFQLAVIGMAAVLFAVFLGSVMLLDGDMGKAKSKPKFTQLFSKSEQINRLSAARLFLFG ARDVWFVVALPIYLGSVFGWDHSLVGGFLALWVIAYGFVQGFAPKITGKKEGRTPDGRAALHWVALLTIVTGIIAYLVQV EWQAEYTIVIGLLMFGAVFAVNSSLHSYLIVSYAKGDGVSVDVGFYYMANAMGRLIGTILSGLVFQVAGFAACLWVSFGF LLLSTLISIKLPKNTE >Mature_416_residues MFFLRSFHFIRFSIMFSQFSHNVRQYMLVTFNYWNFTITDGALRMLVVLYFHDLGYGTLAIASLFLFYEFFGVVTNLLGG WLGARLGLNKTMNVGLIMQVFALLMLALPSVWLTIPWVMAAQALSGIAKDLNKMSAKSAIKTLVPSDQEGALYKWIAILT GSKNALKGAGFFLGGLLLTTVGFQLAVIGMAAVLFAVFLGSVMLLDGDMGKAKSKPKFTQLFSKSEQINRLSAARLFLFG ARDVWFVVALPIYLGSVFGWDHSLVGGFLALWVIAYGFVQGFAPKITGKKEGRTPDGRAALHWVALLTIVTGIIAYLVQV EWQAEYTIVIGLLMFGAVFAVNSSLHSYLIVSYAKGDGVSVDVGFYYMANAMGRLIGTILSGLVFQVAGFAACLWVSFGF LLLSTLISIKLPKNTE
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45634; Mature: 45634
Theoretical pI: Translated: 10.09; Mature: 10.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFFLRSFHFIRFSIMFSQFSHNVRQYMLVTFNYWNFTITDGALRMLVVLYFHDLGYGTLA CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEHHHHHHHHHHHHHHCCHHHHH IASLFLFYEFFGVVTNLLGGWLGARLGLNKTMNVGLIMQVFALLMLALPSVWLTIPWVMA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AQALSGIAKDLNKMSAKSAIKTLVPSDQEGALYKWIAILTGSKNALKGAGFFLGGLLLTT HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHEECCCHHHHHHHHHHHHHHHHH VGFQLAVIGMAAVLFAVFLGSVMLLDGDMGKAKSKPKFTQLFSKSEQINRLSAARLFLFG HHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC ARDVWFVVALPIYLGSVFGWDHSLVGGFLALWVIAYGFVQGFAPKITGKKEGRTPDGRAA CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH LHWVALLTIVTGIIAYLVQVEWQAEYTIVIGLLMFGAVFAVNSSLHSYLIVSYAKGDGVS HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCE VDVGFYYMANAMGRLIGTILSGLVFQVAGFAACLWVSFGFLLLSTLISIKLPKNTE EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MFFLRSFHFIRFSIMFSQFSHNVRQYMLVTFNYWNFTITDGALRMLVVLYFHDLGYGTLA CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEHHHHHHHHHHHHHHCCHHHHH IASLFLFYEFFGVVTNLLGGWLGARLGLNKTMNVGLIMQVFALLMLALPSVWLTIPWVMA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AQALSGIAKDLNKMSAKSAIKTLVPSDQEGALYKWIAILTGSKNALKGAGFFLGGLLLTT HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHEECCCHHHHHHHHHHHHHHHHH VGFQLAVIGMAAVLFAVFLGSVMLLDGDMGKAKSKPKFTQLFSKSEQINRLSAARLFLFG HHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC ARDVWFVVALPIYLGSVFGWDHSLVGGFLALWVIAYGFVQGFAPKITGKKEGRTPDGRAA CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH LHWVALLTIVTGIIAYLVQVEWQAEYTIVIGLLMFGAVFAVNSSLHSYLIVSYAKGDGVS HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCE VDVGFYYMANAMGRLIGTILSGLVFQVAGFAACLWVSFGFLLLSTLISIKLPKNTE EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA