| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is fxsA [H]
Identifier: 209696211
GI number: 209696211
Start: 3036485
End: 3036988
Strand: Reverse
Name: fxsA [H]
Synonym: VSAL_I2805
Alternate gene names: 209696211
Gene position: 3036988-3036485 (Counterclockwise)
Preceding gene: 209696220
Following gene: 209696209
Centisome position: 91.33
GC content: 42.06
Gene sequence:
>504_bases GTGTTTCCTATTTTATTAGTGATGTTTATTTTTGTTCCTATCATTGAAATTGCCTTATTTGTGCAAGTAGGAGGCATGAT CGGAATGTGGCCGACGATTGCGTTAGTGCTAATCACTGCCTTTGTTGGGGCATCTCTGGTTCGTAGCCAAGGCATTCAAA CGTTAATGTCTGTTCAATCAAAAATGCAGCAAGGTGAATTGCCAGCACAGCAAATTGTTGAAGGCGTTATGCTTGCCGTA TCTGGTGTTTTATTACTGACTCCCGGCTTTATGACGGATGCGTTAGGAATGTTGATTTTATTACCAGCCCCACGTGCAAT GCTTGCAAAACAAATCATGAGTCGTGTAAAAGTGAATGGTCTTGGTAGTTCGCAAGGTGGCTTTCATGCTGGTTTTGGTC AACATGACCCATTTGGTCAAGCGAATCAGCAGGATCAACAGGGCGATGTGTTTGAAGGTGAGTTTCAACGTAAAGAAGAC GATCCGAATAAAACATTGAAATAA
Upstream 100 bases:
>100_bases GTTGATGTGCCGCATCTATTATAATAGAGAAAGAAAAAGTGAATAGGTCATAAGGCCTGCTACACTACGACTACTATATT AAACCCTATTGAGGTGAACC
Downstream 100 bases:
>100_bases TGAAATAAAAAAAGCCGCGTGATCACTCTCTATAAATAGACGTCGATAACGCGGCTTTTTTAATGGATAAATTTTTTCTA TTAGCGTCTTAACCAAGAAC
Product: FxsA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 167; Mature: 167
Protein sequence:
>167_residues MFPILLVMFIFVPIIEIALFVQVGGMIGMWPTIALVLITAFVGASLVRSQGIQTLMSVQSKMQQGELPAQQIVEGVMLAV SGVLLLTPGFMTDALGMLILLPAPRAMLAKQIMSRVKVNGLGSSQGGFHAGFGQHDPFGQANQQDQQGDVFEGEFQRKED DPNKTLK
Sequences:
>Translated_167_residues MFPILLVMFIFVPIIEIALFVQVGGMIGMWPTIALVLITAFVGASLVRSQGIQTLMSVQSKMQQGELPAQQIVEGVMLAV SGVLLLTPGFMTDALGMLILLPAPRAMLAKQIMSRVKVNGLGSSQGGFHAGFGQHDPFGQANQQDQQGDVFEGEFQRKED DPNKTLK >Mature_167_residues MFPILLVMFIFVPIIEIALFVQVGGMIGMWPTIALVLITAFVGASLVRSQGIQTLMSVQSKMQQGELPAQQIVEGVMLAV SGVLLLTPGFMTDALGMLILLPAPRAMLAKQIMSRVKVNGLGSSQGGFHAGFGQHDPFGQANQQDQQGDVFEGEFQRKED DPNKTLK
Specific function: Overexpression Alleviates The Exclusion Of Phage T7 In Cells Harboring The F Plasmid. [C]
COG id: COG3030
COG function: function code R; Protein affecting phage T7 exclusion by the F plasmid
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0716 (fxsA) family [H]
Homologues:
Organism=Escherichia coli, GI87082376, Length=160, Percent_Identity=35, Blast_Score=73, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007313 [H]
Pfam domain/function: PF04186 FxsA [H]
EC number: NA
Molecular weight: Translated: 18030; Mature: 18030
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 6.6 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 6.6 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFPILLVMFIFVPIIEIALFVQVGGMIGMWPTIALVLITAFVGASLVRSQGIQTLMSVQS CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KMQQGELPAQQIVEGVMLAVSGVLLLTPGFMTDALGMLILLPAPRAMLAKQIMSRVKVNG HHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC LGSSQGGFHAGFGQHDPFGQANQQDQQGDVFEGEFQRKEDDPNKTLK CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC >Mature Secondary Structure MFPILLVMFIFVPIIEIALFVQVGGMIGMWPTIALVLITAFVGASLVRSQGIQTLMSVQS CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KMQQGELPAQQIVEGVMLAVSGVLLLTPGFMTDALGMLILLPAPRAMLAKQIMSRVKVNG HHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC LGSSQGGFHAGFGQHDPFGQANQQDQQGDVFEGEFQRKEDDPNKTLK CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]