Click here to switch to the map view.

The map label for this gene is secB

Identifier: 209696208

GI number: 209696208

Start: 3033990

End: 3034472

Strand: Reverse

Name: secB

Synonym: VSAL_I2802

Alternate gene names: 209696208

Gene position: 3034472-3033990 (Counterclockwise)

Preceding gene: 209696209

Following gene: 209696207

Centisome position: 91.26

GC content: 42.03

Gene sequence:

>483_bases
ATGGCTGAAGCAGCACAACAAGAACAACAAAACTTTGCAATTCAACGTATCTTCTTAAAAGATGTTTCTTTTGAAGCGCC
TAACTCTCCAAACATGTTCCAAAAAGAGTGGAATCCAGACGTTAAACTGGATCTTGATACTCAAAGTCGTGAACTTGGTG
AAGGTGTTTACGAAGTAATCTTACGTTTAACTGTAACGGTTAAAAACGAAGAAGAAACTGCATTCTTATGTGAAGTTCAA
CAAGGTGGTATCTTTACTGCTGGTCAAATGGAAGAAGCTCAGCTAGCACATTGTCTAGGTGCATTCTGCCCGAACATTCT
TTTCCCATACGCTCGTGAAACGATCTCTAGCCTAGTGGTTAAAGGTACGTTCCCACAACTTAACCTTGCGCCTGCTAACT
TTGACGCATTGTTCATGAATTACCTACAAAACCAAGCTTCAGAAACCGCAGAAGCACCCGCTGAAGCACCCGCTGAAGCG
TAA

Upstream 100 bases:

>100_bases
TTTTGATGTGATATCTGGCTCATTTTTTGGATATTACGAATGCAGAGTGGCATGACATCGTTATTCTGCGTTCATACTTA
TTGATATAAAGGACTTTCCC

Downstream 100 bases:

>100_bases
TTTTTGAAGAAAACCAGTTAATGATTTTTCACTATTGACTGATTTGTAGAGAATAAATGCACTTTTTTATCTAATATGGT
TTCTATATCTACTATAGCTC

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MAEAAQQEQQNFAIQRIFLKDVSFEAPNSPNMFQKEWNPDVKLDLDTQSRELGEGVYEVILRLTVTVKNEEETAFLCEVQ
QGGIFTAGQMEEAQLAHCLGAFCPNILFPYARETISSLVVKGTFPQLNLAPANFDALFMNYLQNQASETAEAPAEAPAEA

Sequences:

>Translated_160_residues
MAEAAQQEQQNFAIQRIFLKDVSFEAPNSPNMFQKEWNPDVKLDLDTQSRELGEGVYEVILRLTVTVKNEEETAFLCEVQ
QGGIFTAGQMEEAQLAHCLGAFCPNILFPYARETISSLVVKGTFPQLNLAPANFDALFMNYLQNQASETAEAPAEAPAEA
>Mature_159_residues
AEAAQQEQQNFAIQRIFLKDVSFEAPNSPNMFQKEWNPDVKLDLDTQSRELGEGVYEVILRLTVTVKNEEETAFLCEVQQ
GGIFTAGQMEEAQLAHCLGAFCPNILFPYARETISSLVVKGTFPQLNLAPANFDALFMNYLQNQASETAEAPAEAPAEA

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=148, Percent_Identity=67.5675675675676, Blast_Score=220, Evalue=4e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_ALISL (B6EN68)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002264138.1
- GeneID:   6988620
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I2802
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- ProtClustDB:   PRK05751
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 17750; Mature: 17619

Theoretical pI: Translated: 3.97; Mature: 3.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEAAQQEQQNFAIQRIFLKDVSFEAPNSPNMFQKEWNPDVKLDLDTQSRELGEGVYEVI
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCEEEEECCHHHHHHHHHHHHH
LRLTVTVKNEEETAFLCEVQQGGIFTAGQMEEAQLAHCLGAFCPNILFPYARETISSLVV
HHHHHEEECCCCCEEEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGTFPQLNLAPANFDALFMNYLQNQASETAEAPAEAPAEA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
AEAAQQEQQNFAIQRIFLKDVSFEAPNSPNMFQKEWNPDVKLDLDTQSRELGEGVYEVI
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCEEEEECCHHHHHHHHHHHHH
LRLTVTVKNEEETAFLCEVQQGGIFTAGQMEEAQLAHCLGAFCPNILFPYARETISSLVV
HHHHHEEECCCCCEEEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGTFPQLNLAPANFDALFMNYLQNQASETAEAPAEAPAEA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA