| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695778
Identifier: 209695778
GI number: 209695778
Start: 2524318
End: 2525109
Strand: Reverse
Name: 209695778
Synonym: VSAL_I2351
Alternate gene names: NA
Gene position: 2525109-2524318 (Counterclockwise)
Preceding gene: 209695779
Following gene: 209695777
Centisome position: 75.94
GC content: 34.72
Gene sequence:
>792_bases ATGTATAAAAAGACAGTTGGATTAAGCATATTATTACTAAGTGGATGCTCAACATTATCTAGTGATGATGATTTTTCTGA TGCAATAAATGAAGTTACCAGAAAGTATAATTATATTTCCATTGAAGGAAAAAATATTACCCCGATAGAGAATAAAGGCA TTGGCGCTAATTCACTAAGAAACACATCACATGTTGTTGCTAATTACCCAACGACAGACAAAATAGCGCCAGAATCCTAC ATAGCCGTTGAATTGAGTTATTTTAGAAGCAGCTATGAATACAATTCGGTTGTATTTAATGGAATAGAAGAAAAATTAAC CGCTTATTCGCCTTCTACGGAATCGTGTACAGAGCATTGCACTGCAACCCAATATTTTACGTTTCCTATTGATAATAAAG AAATTGAAAAATCAGCTAAAGACGGGTTAACGTATGATGTTAACACGACAAATAATATGTCTAAGTTGTCTTTTTCAATC CCTGCGGGTTATTTTCAAGCAATTTTAGATGAAAGAAAATTTAACTCGAATATGAATACGACCGCTCCTTTACCTGTTGC GGTGATTGACGTTGTGAGTGATTCTAAACCGGTAGAAATGACGAAATATTGGTTTGATGAATCAACAGCAGTAGAGCAAG AGGCGTTTACTGAGTGGGCCTTTGCAAATCGTAAAGCAATCAATAGTCCATTAGTGAGTACATCAAAATCTCTTGAAATG TTGACGTATTGGTATGAGAAATCGTCAGTGGAAGATAAGTCGACTATTTTAACGTGGCTACTTAATAAATAA
Upstream 100 bases:
>100_bases CGGTTTCTAAGAAAACTCGTATTTAGCTAACTTTAAAAGCGCTGGCAATTTTTGTCGGCGCTTTTTACTTTAAGAGCATT TAAAATTTAAGGTGTATAAG
Downstream 100 bases:
>100_bases TGTAATTTATCTTATCTATAGTGATCGCTTACATTGGTATTTGTTAAGCGGTCCGCTTCCTTTCTTTATCTCTTCTTGAA CTTAACCTCACTCAATCATT
Product: lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 263; Mature: 263
Protein sequence:
>263_residues MYKKTVGLSILLLSGCSTLSSDDDFSDAINEVTRKYNYISIEGKNITPIENKGIGANSLRNTSHVVANYPTTDKIAPESY IAVELSYFRSSYEYNSVVFNGIEEKLTAYSPSTESCTEHCTATQYFTFPIDNKEIEKSAKDGLTYDVNTTNNMSKLSFSI PAGYFQAILDERKFNSNMNTTAPLPVAVIDVVSDSKPVEMTKYWFDESTAVEQEAFTEWAFANRKAINSPLVSTSKSLEM LTYWYEKSSVEDKSTILTWLLNK
Sequences:
>Translated_263_residues MYKKTVGLSILLLSGCSTLSSDDDFSDAINEVTRKYNYISIEGKNITPIENKGIGANSLRNTSHVVANYPTTDKIAPESY IAVELSYFRSSYEYNSVVFNGIEEKLTAYSPSTESCTEHCTATQYFTFPIDNKEIEKSAKDGLTYDVNTTNNMSKLSFSI PAGYFQAILDERKFNSNMNTTAPLPVAVIDVVSDSKPVEMTKYWFDESTAVEQEAFTEWAFANRKAINSPLVSTSKSLEM LTYWYEKSSVEDKSTILTWLLNK >Mature_263_residues MYKKTVGLSILLLSGCSTLSSDDDFSDAINEVTRKYNYISIEGKNITPIENKGIGANSLRNTSHVVANYPTTDKIAPESY IAVELSYFRSSYEYNSVVFNGIEEKLTAYSPSTESCTEHCTATQYFTFPIDNKEIEKSAKDGLTYDVNTTNNMSKLSFSI PAGYFQAILDERKFNSNMNTTAPLPVAVIDVVSDSKPVEMTKYWFDESTAVEQEAFTEWAFANRKAINSPLVSTSKSLEM LTYWYEKSSVEDKSTILTWLLNK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29542; Mature: 29542
Theoretical pI: Translated: 4.55; Mature: 4.55
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYKKTVGLSILLLSGCSTLSSDDDFSDAINEVTRKYNYISIEGKNITPIENKGIGANSLR CCCCHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCC NTSHVVANYPTTDKIAPESYIAVELSYFRSSYEYNSVVFNGIEEKLTAYSPSTESCTEHC CCCEEEEECCCCCCCCCCCEEEEEEHHHHCCCCCCHHEECCHHHHHHCCCCCHHHHHHHC TATQYFTFPIDNKEIEKSAKDGLTYDVNTTNNMSKLSFSIPAGYFQAILDERKFNSNMNT CCCEEEEECCCCHHHHHHHHCCCEEEECCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCC TAPLPVAVIDVVSDSKPVEMTKYWFDESTAVEQEAFTEWAFANRKAINSPLVSTSKSLEM CCCCCEEEEEECCCCCCCCHHEEECCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHH LTYWYEKSSVEDKSTILTWLLNK HHHHHHHCCCCCHHHHHEEEECC >Mature Secondary Structure MYKKTVGLSILLLSGCSTLSSDDDFSDAINEVTRKYNYISIEGKNITPIENKGIGANSLR CCCCHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCC NTSHVVANYPTTDKIAPESYIAVELSYFRSSYEYNSVVFNGIEEKLTAYSPSTESCTEHC CCCEEEEECCCCCCCCCCCEEEEEEHHHHCCCCCCHHEECCHHHHHHCCCCCHHHHHHHC TATQYFTFPIDNKEIEKSAKDGLTYDVNTTNNMSKLSFSIPAGYFQAILDERKFNSNMNT CCCEEEEECCCCHHHHHHHHCCCEEEECCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCC TAPLPVAVIDVVSDSKPVEMTKYWFDESTAVEQEAFTEWAFANRKAINSPLVSTSKSLEM CCCCCEEEEEECCCCCCCCHHEEECCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHH LTYWYEKSSVEDKSTILTWLLNK HHHHHHHCCCCCHHHHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA