| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695648
Identifier: 209695648
GI number: 209695648
Start: 2379264
End: 2379809
Strand: Reverse
Name: 209695648
Synonym: VSAL_I2211
Alternate gene names: NA
Gene position: 2379809-2379264 (Counterclockwise)
Preceding gene: 209695649
Following gene: 209695646
Centisome position: 71.57
GC content: 33.15
Gene sequence:
>546_bases TTGAAATATTTTATTTCGTTTATTCTACTTCTCACCCTTTCTGGTTGTGTGTCTGAAACTTATCAAGAAAAAAGCACCAT AAATTTAGTCACTACTGGCGATATTAATAATATCCTTCAAAACAAAACCACATTCGCTTGGCACCCTACAATTAGTGCTA ATTTTTTAAATAAAGAATTAAATAACAGAGACATAGAACAACGATTCTCACAAGCATTGAAAGCGTCTCTAGAACAAAAG GGATACTTATTTACAGATGATGTTAGTAACGCTGATTTTTATATTGGTTATGGCTTAGGAATAGAAGAAAACATTAAAGA TATGGCCATTCTAGAGAAAACAGGCTTATTAACGGGAATACAACCAATAGGTATTGATGATAATGATGACTCACAAAAAG CGAGTATTTTTATTGCCCTCTTTTTACCAAATCAGCCTTATCAACAATGGTCAGTGTTAGCTCAAGGCTATACAAATACT GACAATACGTACTCTTTAGATGAAGTCACTGAACTGATGCTCCATGATCTGAAAGAGAAGCAATAA
Upstream 100 bases:
>100_bases TGTTAAAGTGAGATCAACGGTGAGTATTACTACTCACCTTTTTTGAACCTATCACATAAGAAATACTCTAAACTCCAATC AATTTATTCAGGGAACTATT
Downstream 100 bases:
>100_bases ATATCAGATGAAAAATAAGCAGCTAACCTAGCTGCTTATTTCCGTTATGACGAACAACTTATTTCCATTTTCTTACCCCA ACTCGGAGGTAAATTCGCAT
Product: lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 181; Mature: 181
Protein sequence:
>181_residues MKYFISFILLLTLSGCVSETYQEKSTINLVTTGDINNILQNKTTFAWHPTISANFLNKELNNRDIEQRFSQALKASLEQK GYLFTDDVSNADFYIGYGLGIEENIKDMAILEKTGLLTGIQPIGIDDNDDSQKASIFIALFLPNQPYQQWSVLAQGYTNT DNTYSLDEVTELMLHDLKEKQ
Sequences:
>Translated_181_residues MKYFISFILLLTLSGCVSETYQEKSTINLVTTGDINNILQNKTTFAWHPTISANFLNKELNNRDIEQRFSQALKASLEQK GYLFTDDVSNADFYIGYGLGIEENIKDMAILEKTGLLTGIQPIGIDDNDDSQKASIFIALFLPNQPYQQWSVLAQGYTNT DNTYSLDEVTELMLHDLKEKQ >Mature_181_residues MKYFISFILLLTLSGCVSETYQEKSTINLVTTGDINNILQNKTTFAWHPTISANFLNKELNNRDIEQRFSQALKASLEQK GYLFTDDVSNADFYIGYGLGIEENIKDMAILEKTGLLTGIQPIGIDDNDDSQKASIFIALFLPNQPYQQWSVLAQGYTNT DNTYSLDEVTELMLHDLKEKQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20521; Mature: 20521
Theoretical pI: Translated: 4.23; Mature: 4.23
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYFISFILLLTLSGCVSETYQEKSTINLVTTGDINNILQNKTTFAWHPTISANFLNKEL CHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEECCCCCHHHHHHHC NNRDIEQRFSQALKASLEQKGYLFTDDVSNADFYIGYGLGIEENIKDMAILEKTGLLTGI CCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCC QPIGIDDNDDSQKASIFIALFLPNQPYQQWSVLAQGYTNTDNTYSLDEVTELMLHDLKEK CCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC Q C >Mature Secondary Structure MKYFISFILLLTLSGCVSETYQEKSTINLVTTGDINNILQNKTTFAWHPTISANFLNKEL CHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCEEEECCCCCHHHHHHHC NNRDIEQRFSQALKASLEQKGYLFTDDVSNADFYIGYGLGIEENIKDMAILEKTGLLTGI CCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCC QPIGIDDNDDSQKASIFIALFLPNQPYQQWSVLAQGYTNTDNTYSLDEVTELMLHDLKEK CCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC Q C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA