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The map label for this gene is cph2 [H]

Identifier: 209695612

GI number: 209695612

Start: 2334448

End: 2335581

Strand: Direct

Name: cph2 [H]

Synonym: VSAL_I2173

Alternate gene names: 209695612

Gene position: 2334448-2335581 (Clockwise)

Preceding gene: 209695611

Following gene: 209695614

Centisome position: 70.21

GC content: 37.21

Gene sequence:

>1134_bases
ATGCAGCAACTACAACAGACGTTGTCTGAACAGATGCGCATCAATGACCACGAAATTGAACGACGAAAGGTACTGCTTAA
TTTTATCGATGAAGATGCGGATACGCTGAAGCATTGTTTAAAATGGGTAGAACCTTTTGTCGATGCTATTGTTGCTCGAT
TTTATGTGGCTCAAACGCAATTGCCTGAAATTTCTTTAGTGATCGGAGATAAAGAAACATTATCTCGTCTGCATGTCAGT
ATGGCTAAGTACACGTTAGAGTTATTCAGTGGCCTGTATGACCAAGCGTATGTCGATAAACGGTTAAGAATTGGTAAAAT
TCACCATCGTATTGGTGTGAGTCCAAAGCTTTACCTTTCTGGTATTAATCAACTTCAGTTACTGATTGAAGAAGTTATTG
CAGAACAAGCCCACCTTTATAATCAATCCTCTCAAGACATCACACTATCATTAAGAAAGTTATTCTATTTTGATAATCAG
CTGGTGTTTGATACTTATATTGCCAGCTTGCAAATTGAAGTTGAATCTGCAAATCAACAGCTTGAATTGTACGCTCATAA
TTTAGAAAACGTGGTGGCAAAACGCACGGCAGAGCTGACGGACTTATCGATGAAAGATGCATTGACTGGATTATATAATC
AACGTGCATTTTATGAATTACTTGAGAAAAGTTTCAATATTACAGAGCGTTGCCAACAACACCTGACTTTACTTTATATT
GATATCAATTTCTTTAAAGAAGTGAATGATACTCATGGACATAAAGCGGGGGATGAGGTCTTAGTTGGTTTTGCTCAATC
GGCAACGCAAATTATACGAAAGATGGATTTTGTATCCCGTTATGGCGGCGATGAATTTTGTATCGTGTTACCTAACACTA
AAATCGAAGAAGCAAAGAATTTATGCTTACGTTTAATTGAATTGTTTGATAAAAGCTCAGAGCATCCTGTTACGTTAAGT
ATTGGCGGGGCATCGCTGTATCCGGGGGCTAAATTGAGTATGGATAAATTGATTATTGCTGCGGATAATAAAATGTATCA
AGCGAAACAAATTTGTCATGAAACTCGTCAGCATCACTTTGAGTTAATGCCAAGAGATGAGTTGAATGTCACTCGAATGG
TAAATAATAAATAA

Upstream 100 bases:

>100_bases
TTTATTAAGGTTAATCTTACGTACCCTACACAAACATTTATATCAATAACGTATAATTTACATAATTAAATTTTATCTAT
TTTATACGTTGGAGATATAA

Downstream 100 bases:

>100_bases
TTGAAGACCTAGTTAATGCATTAATGATTGGCTAGGTCTTTTCTTTACATTAGCGCTTAAATGTACCTAAAGAAATTAAT
TTATCTCTAAGTAAATCCAC

Product: GGDEF domain protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MQQLQQTLSEQMRINDHEIERRKVLLNFIDEDADTLKHCLKWVEPFVDAIVARFYVAQTQLPEISLVIGDKETLSRLHVS
MAKYTLELFSGLYDQAYVDKRLRIGKIHHRIGVSPKLYLSGINQLQLLIEEVIAEQAHLYNQSSQDITLSLRKLFYFDNQ
LVFDTYIASLQIEVESANQQLELYAHNLENVVAKRTAELTDLSMKDALTGLYNQRAFYELLEKSFNITERCQQHLTLLYI
DINFFKEVNDTHGHKAGDEVLVGFAQSATQIIRKMDFVSRYGGDEFCIVLPNTKIEEAKNLCLRLIELFDKSSEHPVTLS
IGGASLYPGAKLSMDKLIIAADNKMYQAKQICHETRQHHFELMPRDELNVTRMVNNK

Sequences:

>Translated_377_residues
MQQLQQTLSEQMRINDHEIERRKVLLNFIDEDADTLKHCLKWVEPFVDAIVARFYVAQTQLPEISLVIGDKETLSRLHVS
MAKYTLELFSGLYDQAYVDKRLRIGKIHHRIGVSPKLYLSGINQLQLLIEEVIAEQAHLYNQSSQDITLSLRKLFYFDNQ
LVFDTYIASLQIEVESANQQLELYAHNLENVVAKRTAELTDLSMKDALTGLYNQRAFYELLEKSFNITERCQQHLTLLYI
DINFFKEVNDTHGHKAGDEVLVGFAQSATQIIRKMDFVSRYGGDEFCIVLPNTKIEEAKNLCLRLIELFDKSSEHPVTLS
IGGASLYPGAKLSMDKLIIAADNKMYQAKQICHETRQHHFELMPRDELNVTRMVNNK
>Mature_377_residues
MQQLQQTLSEQMRINDHEIERRKVLLNFIDEDADTLKHCLKWVEPFVDAIVARFYVAQTQLPEISLVIGDKETLSRLHVS
MAKYTLELFSGLYDQAYVDKRLRIGKIHHRIGVSPKLYLSGINQLQLLIEEVIAEQAHLYNQSSQDITLSLRKLFYFDNQ
LVFDTYIASLQIEVESANQQLELYAHNLENVVAKRTAELTDLSMKDALTGLYNQRAFYELLEKSFNITERCQQHLTLLYI
DINFFKEVNDTHGHKAGDEVLVGFAQSATQIIRKMDFVSRYGGDEFCIVLPNTKIEEAKNLCLRLIELFDKSSEHPVTLS
IGGASLYPGAKLSMDKLIIAADNKMYQAKQICHETRQHHFELMPRDELNVTRMVNNK

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=165, Percent_Identity=32.7272727272727, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI87081881, Length=147, Percent_Identity=37.4149659863946, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI87082007, Length=158, Percent_Identity=34.1772151898734, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI145693134, Length=156, Percent_Identity=35.8974358974359, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1788956, Length=162, Percent_Identity=34.5679012345679, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1787816, Length=172, Percent_Identity=36.046511627907, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1788381, Length=101, Percent_Identity=37.6237623762376, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787802, Length=158, Percent_Identity=32.9113924050633, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081974, Length=103, Percent_Identity=36.8932038834951, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787262, Length=249, Percent_Identity=28.9156626506024, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87081977, Length=196, Percent_Identity=29.5918367346939, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787541, Length=240, Percent_Identity=25.8333333333333, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 43531; Mature: 43531

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQLQQTLSEQMRINDHEIERRKVLLNFIDEDADTLKHCLKWVEPFVDAIVARFYVAQTQ
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LPEISLVIGDKETLSRLHVSMAKYTLELFSGLYDQAYVDKRLRIGKIHHRIGVSPKLYLS
CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
GINQLQLLIEEVIAEQAHLYNQSSQDITLSLRKLFYFDNQLVFDTYIASLQIEVESANQQ
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHEEHHHHEEEEEECCCCH
LELYAHNLENVVAKRTAELTDLSMKDALTGLYNQRAFYELLEKSFNITERCQQHLTLLYI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCEEEEE
DINFFKEVNDTHGHKAGDEVLVGFAQSATQIIRKMDFVSRYGGDEFCIVLPNTKIEEAKN
EHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
LCLRLIELFDKSSEHPVTLSIGGASLYPGAKLSMDKLIIAADNKMYQAKQICHETRQHHF
HHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHE
ELMPRDELNVTRMVNNK
ECCCCCCCCHHHHCCCC
>Mature Secondary Structure
MQQLQQTLSEQMRINDHEIERRKVLLNFIDEDADTLKHCLKWVEPFVDAIVARFYVAQTQ
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LPEISLVIGDKETLSRLHVSMAKYTLELFSGLYDQAYVDKRLRIGKIHHRIGVSPKLYLS
CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
GINQLQLLIEEVIAEQAHLYNQSSQDITLSLRKLFYFDNQLVFDTYIASLQIEVESANQQ
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHEEHHHHEEEEEECCCCH
LELYAHNLENVVAKRTAELTDLSMKDALTGLYNQRAFYELLEKSFNITERCQQHLTLLYI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCEEEEE
DINFFKEVNDTHGHKAGDEVLVGFAQSATQIIRKMDFVSRYGGDEFCIVLPNTKIEEAKN
EHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
LCLRLIELFDKSSEHPVTLSIGGASLYPGAKLSMDKLIIAADNKMYQAKQICHETRQHHF
HHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHE
ELMPRDELNVTRMVNNK
ECCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]