Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is yfcL [H]

Identifier: 209695611

GI number: 209695611

Start: 2334084

End: 2334341

Strand: Direct

Name: yfcL [H]

Synonym: VSAL_I2172

Alternate gene names: 209695611

Gene position: 2334084-2334341 (Clockwise)

Preceding gene: 209695610

Following gene: 209695612

Centisome position: 70.19

GC content: 36.43

Gene sequence:

>258_bases
ATGATCATTGAATTTGAAGAAAAACTGCTTGAATTAATTGATGCTCGTATTGAAACTGCATCAGATGATGAGTTATTTGC
TGGTGGGTATTTACGTGGGCATATTTCCCTGTCAGTAGCGAAATGTGAAGAGCAGGGCGTTAGTGATCTTGATGTATTAA
AACAGCATATTAATGACAGTTTAGAAGCCGCAAAATCTGAATTATCTCCAGCAGACAGAATCATTGTTGCTGATTTATGG
GATCTTTTACGCAATTAA

Upstream 100 bases:

>100_bases
GGTTTACCACCGCGAGTTGAGATGTTATCTACTGCGTTACGTGACTTTTACCAAACCGCCCCATTAACTAAAGAACAATT
TATTGTCCAATAGGAAAGAA

Downstream 100 bases:

>100_bases
CCTTAATTTATTAAGGTTAATCTTACGTACCCTACACAAACATTTATATCAATAACGTATAATTTACATAATTAAATTTT
ATCTATTTTATACGTTGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 85

Protein sequence:

>85_residues
MIIEFEEKLLELIDARIETASDDELFAGGYLRGHISLSVAKCEEQGVSDLDVLKQHINDSLEAAKSELSPADRIIVADLW
DLLRN

Sequences:

>Translated_85_residues
MIIEFEEKLLELIDARIETASDDELFAGGYLRGHISLSVAKCEEQGVSDLDVLKQHINDSLEAAKSELSPADRIIVADLW
DLLRN
>Mature_85_residues
MIIEFEEKLLELIDARIETASDDELFAGGYLRGHISLSVAKCEEQGVSDLDVLKQHINDSLEAAKSELSPADRIIVADLW
DLLRN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788665, Length=85, Percent_Identity=45.8823529411765, Blast_Score=76, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014987 [H]

Pfam domain/function: PF08891 YfcL [H]

EC number: NA

Molecular weight: Translated: 9497; Mature: 9497

Theoretical pI: Translated: 4.07; Mature: 4.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIEFEEKLLELIDARIETASDDELFAGGYLRGHISLSVAKCEEQGVSDLDVLKQHINDS
CCCHHHHHHHHHHHHHHCCCCCCCEEECCEEEEHHHHHHHHHHHCCCCHHHHHHHHHCHH
LEAAKSELSPADRIIVADLWDLLRN
HHHHHHHCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MIIEFEEKLLELIDARIETASDDELFAGGYLRGHISLSVAKCEEQGVSDLDVLKQHINDS
CCCHHHHHHHHHHHHHHCCCCCCCEEECCEEEEHHHHHHHHHHHCCCCHHHHHHHHHCHH
LEAAKSELSPADRIIVADLWDLLRN
HHHHHHHCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]