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The map label for this gene is rnfB

Identifier: 209695338

GI number: 209695338

Start: 2005812

End: 2006396

Strand: Reverse

Name: rnfB

Synonym: VSAL_I1871

Alternate gene names: 209695338

Gene position: 2006396-2005812 (Counterclockwise)

Preceding gene: 209695339

Following gene: 209695337

Centisome position: 60.34

GC content: 40.85

Gene sequence:

>585_bases
ATGAGTTCTATTTTAATTGCCGTTATTGCAATCTCTGCCCTAGCCCTCGTTTTCGGGTTAATTCTCGGTTTTGCATCAAT
AAAATTCAAAGTTGAATCCGATCCAATCGTCGATCAAATTGACTCTATATTGCCACAAACTCAATGTGGTCAATGTGGTT
ATCCAGGTTGCAAGCCTTATGCAGAAGCCATTGCAAACGGTGACACCATTAATAAATGTCCTCCAGGTGGTCAAGCTACG
ATTGAAAAGTTAGCCGATCTAATGGGCGTGGATATCCCAAGCTCTGCTCATGATGAAGAAAAAAGTATTAAAAAAATCGC
CTTTATTCATGAGGACATGTGTATTGGATGTACTAAATGCATTCAAGCCTGCCCTGTGGACGCGATTGTTGGCGGCACAA
AAGCACTACATACTGTTATTGAAGCAGAATGTACTGGCTGTGATTTATGTGTTGCGCCATGCCCAACAGATTGCATTGAA
ATGATCCCTGTAAATACAACGCCTGATAATTGGAAATGGGATTTAAATACAATCCCTGTTGTGAATCTTCCTGCAGATAA
ACCAACTAAAGCATCGGAGCTGTAA

Upstream 100 bases:

>100_bases
ATGTACCTCTGCCATTTAAAGGCGCATCGATTGCTATGATTACTGCAGGATTAATGTCTTTAGCCTTTATGGGCTTTACT
GGTCTAGTGAAATTATAAAC

Downstream 100 bases:

>100_bases
CCCATGTTGTCCATTATCGAAAAAATCAAACAAGGTCAATTATGGGATTTTCACGGAGGTATTCACCCTGCTGAAAATAA
ACACATTTCGACACGAAATA

Product: electron transport complex protein RnfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MSSILIAVIAISALALVFGLILGFASIKFKVESDPIVDQIDSILPQTQCGQCGYPGCKPYAEAIANGDTINKCPPGGQAT
IEKLADLMGVDIPSSAHDEEKSIKKIAFIHEDMCIGCTKCIQACPVDAIVGGTKALHTVIEAECTGCDLCVAPCPTDCIE
MIPVNTTPDNWKWDLNTIPVVNLPADKPTKASEL

Sequences:

>Translated_194_residues
MSSILIAVIAISALALVFGLILGFASIKFKVESDPIVDQIDSILPQTQCGQCGYPGCKPYAEAIANGDTINKCPPGGQAT
IEKLADLMGVDIPSSAHDEEKSIKKIAFIHEDMCIGCTKCIQACPVDAIVGGTKALHTVIEAECTGCDLCVAPCPTDCIE
MIPVNTTPDNWKWDLNTIPVVNLPADKPTKASEL
>Mature_193_residues
SSILIAVIAISALALVFGLILGFASIKFKVESDPIVDQIDSILPQTQCGQCGYPGCKPYAEAIANGDTINKCPPGGQATI
EKLADLMGVDIPSSAHDEEKSIKKIAFIHEDMCIGCTKCIQACPVDAIVGGTKALHTVIEAECTGCDLCVAPCPTDCIEM
IPVNTTPDNWKWDLNTIPVVNLPADKPTKASEL

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains

Homologues:

Organism=Escherichia coli, GI1787915, Length=191, Percent_Identity=60.2094240837696, Blast_Score=236, Evalue=6e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFB_ALISL (B6EGH6)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002263267.1
- GeneID:   6989133
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I1871
- HOGENOM:   HBG549899
- OMA:   KFKVEGD
- ProtClustDB:   PRK05113
- GO:   GO:0006810
- HAMAP:   MF_00463
- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202
- PIRSF:   PIRSF005784
- TIGRFAMs:   TIGR01944

Pfam domain/function: PF00037 Fer4; PF04060 FeS

EC number: NA

Molecular weight: Translated: 20501; Mature: 20370

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: PS00198 4FE4S_FER_1; PS51379 4FE4S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
8.8 %Cys+Met (Translated Protein)
6.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
8.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSILIAVIAISALALVFGLILGFASIKFKVESDPIVDQIDSILPQTQCGQCGYPGCKPY
CCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCHHH
AEAIANGDTINKCPPGGQATIEKLADLMGVDIPSSAHDEEKSIKKIAFIHEDMCIGCTKC
HHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
IQACPVDAIVGGTKALHTVIEAECTGCDLCVAPCPTDCIEMIPVNTTPDNWKWDLNTIPV
HHHCCCHHHHCCHHHHHHHHHHCCCCCCEECCCCCHHHHHEECCCCCCCCEEEECCCCCE
VNLPADKPTKASEL
EECCCCCCCCCCCC
>Mature Secondary Structure 
SSILIAVIAISALALVFGLILGFASIKFKVESDPIVDQIDSILPQTQCGQCGYPGCKPY
CHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCHHH
AEAIANGDTINKCPPGGQATIEKLADLMGVDIPSSAHDEEKSIKKIAFIHEDMCIGCTKC
HHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
IQACPVDAIVGGTKALHTVIEAECTGCDLCVAPCPTDCIEMIPVNTTPDNWKWDLNTIPV
HHHCCCHHHHCCHHHHHHHHHHCCCCCCEECCCCCHHHHHEECCCCCCCCEEEECCCCCE
VNLPADKPTKASEL
EECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA