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The map label for this gene is rnfA

Identifier: 209695339

GI number: 209695339

Start: 2006399

End: 2006980

Strand: Reverse

Name: rnfA

Synonym: VSAL_I1872

Alternate gene names: 209695339

Gene position: 2006980-2006399 (Counterclockwise)

Preceding gene: 209695343

Following gene: 209695338

Centisome position: 60.36

GC content: 39.18

Gene sequence:

>582_bases
ATGACTGAGTATCTCTTACTTCTTATTGGGACTGTTTTAGTTAACAACTTTGTATTGGTAAAGTTTTTAGGACTTTGTCC
ATTTATGGGTGTGTCTAAGAAACTAGAAAGTGCCATTGGAATGGGCCTTGCAACGACCTTCGTTCTGACTTTAGCGTCAG
TATGTTCTTATCTTATTGAAACCTATATTTTAGCGCCTCTAGGGATCGAATACTTACGCACGATGAGTTTCATTCTAGTG
ATCGCCGTTGTTGTTCAATTTACAGAAATGGTTGTTCACAAAACCAGTCCGACGCTTTACCGTGTACTTGGTATATTTTT
GCCACTAATAACAACAAACTGTGCTGTACTTGGTGTCGCCCTATTAAATGTCACCGAAAATCATAACTTTATTGAATCTA
TCATTTATGGTTTTGGTGCTGCCGTAGGTTTCTCTCTTGTTTTAATCCTTTTCTCTGCCATGCGTGAACGCATCGCCGCT
GCAGATGTACCTCTGCCATTTAAAGGCGCATCGATTGCTATGATTACTGCAGGATTAATGTCTTTAGCCTTTATGGGCTT
TACTGGTCTAGTGAAATTATAA

Upstream 100 bases:

>100_bases
TTTTTGCCTAAAATTTAAAAACCTATTCTTTCTAAGGTTGTTATCACTGCCGTAAAGTCCGATAATAACCAGACCATCTA
TTATTATAAAAATCATCTGC

Downstream 100 bases:

>100_bases
ACATGAGTTCTATTTTAATTGCCGTTATTGCAATCTCTGCCCTAGCCCTCGTTTTCGGGTTAATTCTCGGTTTTGCATCA
ATAAAATTCAAAGTTGAATC

Product: Na(+)-translocating NADH-quinone reductase subunit E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MTEYLLLLIGTVLVNNFVLVKFLGLCPFMGVSKKLESAIGMGLATTFVLTLASVCSYLIETYILAPLGIEYLRTMSFILV
IAVVVQFTEMVVHKTSPTLYRVLGIFLPLITTNCAVLGVALLNVTENHNFIESIIYGFGAAVGFSLVLILFSAMRERIAA
ADVPLPFKGASIAMITAGLMSLAFMGFTGLVKL

Sequences:

>Translated_193_residues
MTEYLLLLIGTVLVNNFVLVKFLGLCPFMGVSKKLESAIGMGLATTFVLTLASVCSYLIETYILAPLGIEYLRTMSFILV
IAVVVQFTEMVVHKTSPTLYRVLGIFLPLITTNCAVLGVALLNVTENHNFIESIIYGFGAAVGFSLVLILFSAMRERIAA
ADVPLPFKGASIAMITAGLMSLAFMGFTGLVKL
>Mature_192_residues
TEYLLLLIGTVLVNNFVLVKFLGLCPFMGVSKKLESAIGMGLATTFVLTLASVCSYLIETYILAPLGIEYLRTMSFILVI
AVVVQFTEMVVHKTSPTLYRVLGIFLPLITTNCAVLGVALLNVTENHNFIESIIYGFGAAVGFSLVLILFSAMRERIAAA
DVPLPFKGASIAMITAGLMSLAFMGFTGLVKL

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family

Homologues:

Organism=Escherichia coli, GI1787914, Length=193, Percent_Identity=78.7564766839378, Blast_Score=314, Evalue=2e-87,
Organism=Escherichia coli, GI1787919, Length=171, Percent_Identity=32.1637426900585, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFA_ALISL (B6EGH7)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002263268.1
- GeneID:   6989132
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I1872
- HOGENOM:   HBG624915
- OMA:   LRTIAFI
- ProtClustDB:   PRK05151
- GO:   GO:0006810
- HAMAP:   MF_00459
- InterPro:   IPR003667
- InterPro:   IPR011293
- PIRSF:   PIRSF006102
- TIGRFAMs:   TIGR01943

Pfam domain/function: PF02508 Rnf-Nqr

EC number: NA

Molecular weight: Translated: 20812; Mature: 20680

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x20eda85c)-; HASH(0x2126c6c8)-; HASH(0x211f8288)-; HASH(0x21209438)-; HASH(0x20d1b538)-; HASH(0x20a77d28)-;

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEYLLLLIGTVLVNNFVLVKFLGLCPFMGVSKKLESAIGMGLATTFVLTLASVCSYLIE
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TYILAPLGIEYLRTMSFILVIAVVVQFTEMVVHKTSPTLYRVLGIFLPLITTNCAVLGVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLNVTENHNFIESIIYGFGAAVGFSLVLILFSAMRERIAAADVPLPFKGASIAMITAGLM
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
SLAFMGFTGLVKL
HHHHHHHHHHHCH
>Mature Secondary Structure 
TEYLLLLIGTVLVNNFVLVKFLGLCPFMGVSKKLESAIGMGLATTFVLTLASVCSYLIE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TYILAPLGIEYLRTMSFILVIAVVVQFTEMVVHKTSPTLYRVLGIFLPLITTNCAVLGVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LLNVTENHNFIESIIYGFGAAVGFSLVLILFSAMRERIAAADVPLPFKGASIAMITAGLM
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
SLAFMGFTGLVKL
HHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA