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The map label for this gene is rnfC [H]

Identifier: 209695337

GI number: 209695337

Start: 2003658

End: 2005808

Strand: Reverse

Name: rnfC [H]

Synonym: VSAL_I1870

Alternate gene names: 209695337

Gene position: 2005808-2003658 (Counterclockwise)

Preceding gene: 209695338

Following gene: 209695336

Centisome position: 60.32

GC content: 42.58

Gene sequence:

>2151_bases
ATGTTGTCCATTATCGAAAAAATCAAACAAGGTCAATTATGGGATTTTCACGGAGGTATTCACCCTGCTGAAAATAAACA
CATTTCGACACGAAATACCGTCCAACAAGCGGGGGTTCCAGATCAACTAATCCTTCCACTAAAACAACATATTGGTGCTA
AAGGCGATATTCTTGTTACCGTAGGTCAACAGGTATTAAAAGGGCAACCCCTCACTCAAAGTAATATTGCTATGTGTGTG
CCTATTCATGCGCCCACTTCAGGAAAGATCGTAGCAATAGAGCCAAGAACCGTTGCCCACCCTTCAGGTCTAACAGACTT
GTGCATTGTCATTGAGTCTGATGGTAATGATCAGTGGATTGAAAATAGAAAACCGATTACTGATTTTGCAACCCGAGATC
CAATAAAACTTATTGAGCGTATTCGTCAATCTGGTATATCAGGCATGGGCGGAGCGGGTTTTCCTACGAGTAGAAAATTA
CAAAGCGGCATTGGGAAAGCAGACATGCTGATCATCAATGCAGCTGAATGTGAACCCTATATCACCGCAGATGATCGTTT
AATGCAAGATTATGCCGCTGAGGTGATTGTTGGTATAAAAATCCTACAGCACATTTTAACGCCTAAAATAGCGATTATCG
GCATTGAGGATAACAAACCGGAAGCGATTAAAGCATTAAATGCGATCGTAACAGAACACGATAATATCTTAATTCGAGTG
ATTCCAACCAAATACCCATCAGGTGGCTCTCGCCAGCTAGTGAAAATCTTGACAGGTAAAGAAGTACCTGCGAGTGGGCG
CTCTACCGACATTGGGGTTATTGTTCAAAATGTAGGTACAATATTTGCCGTTAAGCGCGCGATATGTGATGCAGAACCAT
TAATTGAGCGAGTGGTTACATTAACAGGGAACAGTTTAGATATACCGGGGAATTTCTGGGTTCGCTTAGGTACCAGTGTC
GACTATTTAATGACGCTTACTGGCTATAAAGCCGATAAAAAACACCCGCGTATTATCATGGGTGGATCGCTAATGGGATT
CACATTACCCCACCAACAAATACCAATAACTAAAATTACCAACTGCATTATTACGCCAGACAGAAAAGAGCTCCCTCTTT
ACAACCATGAAATGGCCTGTATTCGTTGCAGTAGTTGCGCAGATGCTTGTCCCGTAGCCTTACTACCACAACAATTATAC
TGGTACTCAAAATCCGAAGATTATGAAAAATGTGAAGAATACCATTTATCTGATTGTATAGAATGTGGGGCATGCGCTTA
TGTCTGCCCAAGTGAGATCCCACTTGTTCAATATTACCGCCAAGCTAAATCTGAAATTTATGCACGTAAGCAAGATTCAC
TTGCGGCAGATCGTGCCAAAGTACGTTTTGAAGAAAAAAATGCACGAATGGAACGAGATAAACTAGAACGAGAGAACAAA
TTTAAACTCGCTGCAGAAAACCGTCGTAAAGAAATGAGCACAGAAAAACCAGCAGGATCAGGTAATGATGCCATTGCTGC
GGCTATAGCAAGAGTTAAAGCTCAAAAAGCAGCAGAAGAATCTGGAATCGCGAGCCCTAAACCAGCGGTTGCGGCGGCGA
TTGCTCGTGCAAAAGCAAAACAAGCTGAAGCGACCAAAGACCATTCTGGAGATCCCGATAATTCTGAAATGGCTAAATTA
CGTGAAGAGCGTAAGCAACAAGCACGTGACAGAAAAGCAAAACAAGAATTAGAGAATACAACTTCAACCAATGAAGAAAA
TTCGCCGAATAAAACTGAGAAAAAAGACGCTGTAGCTGCCGCCATTGCACGAGCAAAAGCCCGTAAAGCAGCACAAACTG
AAAAAGACGCTCCTTCATCAAACGCTGAGACTAAAACAAAACCAGAATCAACGAGTGATAATGAGACACCGACAGAAGAT
CCAAAGAAAGCAGCCGTAGCTGCCGCTATTGCACGAGCGAAAGCCCGTAAAGCAGCACAAGCTGAAAAAGACGCTCCTTC
ATCAAACGCTGAGACTGAAACAAAACCAGAATCAACGAGTGATAATGAGACACCGACAGAAGATCCAAAGAAAGCAGCCG
TAGCTGCCGCTATTTCTCGTGCTAAAGCTCGCAAAGCAGCACAACAAATTGAAAAAAATAAGGAAGAGTAA

Upstream 100 bases:

>100_bases
TGTAAATACAACGCCTGATAATTGGAAATGGGATTTAAATACAATCCCTGTTGTGAATCTTCCTGCAGATAAACCAACTA
AAGCATCGGAGCTGTAACCC

Downstream 100 bases:

>100_bases
CAGTGGCCTTTTTTATCACTAGCTCACCACACGCTCACAGTAAAAAGAGCACTCAAACCATGATGAAAATGGTCGCACTC
GCGACTATTCCTGGTTTACT

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 716; Mature: 716

Protein sequence:

>716_residues
MLSIIEKIKQGQLWDFHGGIHPAENKHISTRNTVQQAGVPDQLILPLKQHIGAKGDILVTVGQQVLKGQPLTQSNIAMCV
PIHAPTSGKIVAIEPRTVAHPSGLTDLCIVIESDGNDQWIENRKPITDFATRDPIKLIERIRQSGISGMGGAGFPTSRKL
QSGIGKADMLIINAAECEPYITADDRLMQDYAAEVIVGIKILQHILTPKIAIIGIEDNKPEAIKALNAIVTEHDNILIRV
IPTKYPSGGSRQLVKILTGKEVPASGRSTDIGVIVQNVGTIFAVKRAICDAEPLIERVVTLTGNSLDIPGNFWVRLGTSV
DYLMTLTGYKADKKHPRIIMGGSLMGFTLPHQQIPITKITNCIITPDRKELPLYNHEMACIRCSSCADACPVALLPQQLY
WYSKSEDYEKCEEYHLSDCIECGACAYVCPSEIPLVQYYRQAKSEIYARKQDSLAADRAKVRFEEKNARMERDKLERENK
FKLAAENRRKEMSTEKPAGSGNDAIAAAIARVKAQKAAEESGIASPKPAVAAAIARAKAKQAEATKDHSGDPDNSEMAKL
REERKQQARDRKAKQELENTTSTNEENSPNKTEKKDAVAAAIARAKARKAAQTEKDAPSSNAETKTKPESTSDNETPTED
PKKAAVAAAIARAKARKAAQAEKDAPSSNAETETKPESTSDNETPTEDPKKAAVAAAISRAKARKAAQQIEKNKEE

Sequences:

>Translated_716_residues
MLSIIEKIKQGQLWDFHGGIHPAENKHISTRNTVQQAGVPDQLILPLKQHIGAKGDILVTVGQQVLKGQPLTQSNIAMCV
PIHAPTSGKIVAIEPRTVAHPSGLTDLCIVIESDGNDQWIENRKPITDFATRDPIKLIERIRQSGISGMGGAGFPTSRKL
QSGIGKADMLIINAAECEPYITADDRLMQDYAAEVIVGIKILQHILTPKIAIIGIEDNKPEAIKALNAIVTEHDNILIRV
IPTKYPSGGSRQLVKILTGKEVPASGRSTDIGVIVQNVGTIFAVKRAICDAEPLIERVVTLTGNSLDIPGNFWVRLGTSV
DYLMTLTGYKADKKHPRIIMGGSLMGFTLPHQQIPITKITNCIITPDRKELPLYNHEMACIRCSSCADACPVALLPQQLY
WYSKSEDYEKCEEYHLSDCIECGACAYVCPSEIPLVQYYRQAKSEIYARKQDSLAADRAKVRFEEKNARMERDKLERENK
FKLAAENRRKEMSTEKPAGSGNDAIAAAIARVKAQKAAEESGIASPKPAVAAAIARAKAKQAEATKDHSGDPDNSEMAKL
REERKQQARDRKAKQELENTTSTNEENSPNKTEKKDAVAAAIARAKARKAAQTEKDAPSSNAETKTKPESTSDNETPTED
PKKAAVAAAIARAKARKAAQAEKDAPSSNAETETKPESTSDNETPTEDPKKAAVAAAISRAKARKAAQQIEKNKEE
>Mature_716_residues
MLSIIEKIKQGQLWDFHGGIHPAENKHISTRNTVQQAGVPDQLILPLKQHIGAKGDILVTVGQQVLKGQPLTQSNIAMCV
PIHAPTSGKIVAIEPRTVAHPSGLTDLCIVIESDGNDQWIENRKPITDFATRDPIKLIERIRQSGISGMGGAGFPTSRKL
QSGIGKADMLIINAAECEPYITADDRLMQDYAAEVIVGIKILQHILTPKIAIIGIEDNKPEAIKALNAIVTEHDNILIRV
IPTKYPSGGSRQLVKILTGKEVPASGRSTDIGVIVQNVGTIFAVKRAICDAEPLIERVVTLTGNSLDIPGNFWVRLGTSV
DYLMTLTGYKADKKHPRIIMGGSLMGFTLPHQQIPITKITNCIITPDRKELPLYNHEMACIRCSSCADACPVALLPQQLY
WYSKSEDYEKCEEYHLSDCIECGACAYVCPSEIPLVQYYRQAKSEIYARKQDSLAADRAKVRFEEKNARMERDKLERENK
FKLAAENRRKEMSTEKPAGSGNDAIAAAIARVKAQKAAEESGIASPKPAVAAAIARAKAKQAEATKDHSGDPDNSEMAKL
REERKQQARDRKAKQELENTTSTNEENSPNKTEKKDAVAAAIARAKARKAAQTEKDAPSSNAETKTKPESTSDNETPTED
PKKAAVAAAIARAKARKAAQAEKDAPSSNAETETKPESTSDNETPTEDPKKAAVAAAISRAKARKAAQQIEKNKEE

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=594, Percent_Identity=51.3468013468013, Blast_Score=587, Evalue=1e-169,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 78042; Mature: 78042

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSIIEKIKQGQLWDFHGGIHPAENKHISTRNTVQQAGVPDQLILPLKQHIGAKGDILVT
CCHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEE
VGQQVLKGQPLTQSNIAMCVPIHAPTSGKIVAIEPRTVAHPSGLTDLCIVIESDGNDQWI
ECHHHHCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCHH
ENRKPITDFATRDPIKLIERIRQSGISGMGGAGFPTSRKLQSGIGKADMLIINAAECEPY
HCCCCCCHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCCE
ITADDRLMQDYAAEVIVGIKILQHILTPKIAIIGIEDNKPEAIKALNAIVTEHDNILIRV
ECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEE
IPTKYPSGGSRQLVKILTGKEVPASGRSTDIGVIVQNVGTIFAVKRAICDAEPLIERVVT
ECCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LTGNSLDIPGNFWVRLGTSVDYLMTLTGYKADKKHPRIIMGGSLMGFTLPHQQIPITKIT
HCCCCEECCCCEEEEECCCCEEHHHCCCCCCCCCCCEEEECCCEEEECCCCCCCCHHHHH
NCIITPDRKELPLYNHEMACIRCSSCADACPVALLPQQLYWYSKSEDYEKCEEYHLSDCI
HEEECCCCCCCCCCCCCCCEEEECCCCCCCCHHHCCHHHHHCCCCCCHHHHHHHHHHHHH
ECGACAYVCPSEIPLVQYYRQAKSEIYARKQDSLAADRAKVRFEEKNARMERDKLERENK
HHCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHCCC
FKLAAENRRKEMSTEKPAGSGNDAIAAAIARVKAQKAAEESGIASPKPAVAAAIARAKAK
EEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
QAEATKDHSGDPDNSEMAKLREERKQQARDRKAKQELENTTSTNEENSPNKTEKKDAVAA
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
AIARAKARKAAQTEKDAPSSNAETKTKPESTSDNETPTEDPKKAAVAAAIARAKARKAAQ
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AEKDAPSSNAETETKPESTSDNETPTEDPKKAAVAAAISRAKARKAAQQIEKNKEE
HHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLSIIEKIKQGQLWDFHGGIHPAENKHISTRNTVQQAGVPDQLILPLKQHIGAKGDILVT
CCHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEE
VGQQVLKGQPLTQSNIAMCVPIHAPTSGKIVAIEPRTVAHPSGLTDLCIVIESDGNDQWI
ECHHHHCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCHH
ENRKPITDFATRDPIKLIERIRQSGISGMGGAGFPTSRKLQSGIGKADMLIINAAECEPY
HCCCCCCHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCCE
ITADDRLMQDYAAEVIVGIKILQHILTPKIAIIGIEDNKPEAIKALNAIVTEHDNILIRV
ECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEE
IPTKYPSGGSRQLVKILTGKEVPASGRSTDIGVIVQNVGTIFAVKRAICDAEPLIERVVT
ECCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LTGNSLDIPGNFWVRLGTSVDYLMTLTGYKADKKHPRIIMGGSLMGFTLPHQQIPITKIT
HCCCCEECCCCEEEEECCCCEEHHHCCCCCCCCCCCEEEECCCEEEECCCCCCCCHHHHH
NCIITPDRKELPLYNHEMACIRCSSCADACPVALLPQQLYWYSKSEDYEKCEEYHLSDCI
HEEECCCCCCCCCCCCCCCEEEECCCCCCCCHHHCCHHHHHCCCCCCHHHHHHHHHHHHH
ECGACAYVCPSEIPLVQYYRQAKSEIYARKQDSLAADRAKVRFEEKNARMERDKLERENK
HHCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHCCC
FKLAAENRRKEMSTEKPAGSGNDAIAAAIARVKAQKAAEESGIASPKPAVAAAIARAKAK
EEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
QAEATKDHSGDPDNSEMAKLREERKQQARDRKAKQELENTTSTNEENSPNKTEKKDAVAA
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
AIARAKARKAAQTEKDAPSSNAETKTKPESTSDNETPTEDPKKAAVAAAIARAKARKAAQ
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AEKDAPSSNAETETKPESTSDNETPTEDPKKAAVAAAISRAKARKAAQQIEKNKEE
HHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]