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The map label for this gene is rnfD

Identifier: 209695336

GI number: 209695336

Start: 2002600

End: 2003655

Strand: Reverse

Name: rnfD

Synonym: VSAL_I1869

Alternate gene names: 209695336

Gene position: 2003655-2002600 (Counterclockwise)

Preceding gene: 209695337

Following gene: 209695335

Centisome position: 60.26

GC content: 40.53

Gene sequence:

>1056_bases
GTGGCCTTTTTTATCACTAGCTCACCACACGCTCACAGTAAAAAGAGCACTCAAACCATGATGAAAATGGTCGCACTCGC
GACTATTCCTGGTTTACTAGCTCAAACCTACTTCTTTGGCTGGGGGACATTACTTCAAGTTCTTCTCGCTATTATTACCG
CTATTTTGGCAGAAGCGTTCGTTTTAAAATGCAGAAAAAGACCTTTAGCGCCATACTTAAAAGATAATAGTGCTTTATTA
ACTGGCTTATTATTAGCTCTGGCCATTCCACCTCTTTCCCCATGGTGGCTCACTGTTATTGGTGTGTTTTTTGCCATTGT
GATAGCGAAACATCTGTATGGTGGATTAGGTCAGAATCTATTTAATCCAGCAATGGCTGCTTATGTTGTTCTTTTGATTT
CATTTCCAGTTCAAATGACCACTTGGTTACCAGCAAAAGAATTGTTAGTTGAGCACATTAGCTTCATGGATTCTGTTTGG
TTAATCTTTCATGGGTTAAGTCAAGATGGGTTCTCTGTACATCAACTAACGATGAACGTTGATGGAATGACAATGGCTAC
GCCATTAGATACAGTAAAAACAGGATTAAAAGCAGGCTTAACCACCAATGAAATTCTATCTGCACCTATATTTAATGGCT
TTGCAGGATTAGGGTGGCTATGGGTTAACGTTGGTTTCTTATTGGGAGGACTATTTCTTCTGCAACAACGTCTTATTCAT
TGGCACATACCGGTCAGTTTCTTAGCCAGTTTATTTATCGTGAGTTCTTTGTTCGCAGTATTCTCACCAGATACAACGAC
ATCACCAATCTTCAATCTATTCTCTGGTGCGACAATGTTAGGTGCTTTCTTTATTGCAACTGATCCCGTTTCTGCTGCGA
CCACAAACAAAGGCCGTTTATATTATGGCGCTTTAATTGGACTATTGGTTTATATGATCCGCTCTTGGGGAGGCTTCCCG
GATGGCGTTGCTTTTGCCGTTCTATTGGCAAACATGTGTGTCCCCCTTATTGATTATTACACTAAACCAAGAACTTACGG
CCATAAGAAAGGATAA

Upstream 100 bases:

>100_bases
CGACAGAAGATCCAAAGAAAGCAGCCGTAGCTGCCGCTATTTCTCGTGCTAAAGCTCGCAAAGCAGCACAACAAATTGAA
AAAAATAAGGAAGAGTAACA

Downstream 100 bases:

>100_bases
AACATGCTTACTATAATGAAAAAAAGCAGCCTTGTTTTGGCTCTGTTTGCGATTGCAGCGACCTCTTTAGTAATGATTAC
TTATGCGTTAACTAAAGATC

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MAFFITSSPHAHSKKSTQTMMKMVALATIPGLLAQTYFFGWGTLLQVLLAIITAILAEAFVLKCRKRPLAPYLKDNSALL
TGLLLALAIPPLSPWWLTVIGVFFAIVIAKHLYGGLGQNLFNPAMAAYVVLLISFPVQMTTWLPAKELLVEHISFMDSVW
LIFHGLSQDGFSVHQLTMNVDGMTMATPLDTVKTGLKAGLTTNEILSAPIFNGFAGLGWLWVNVGFLLGGLFLLQQRLIH
WHIPVSFLASLFIVSSLFAVFSPDTTTSPIFNLFSGATMLGAFFIATDPVSAATTNKGRLYYGALIGLLVYMIRSWGGFP
DGVAFAVLLANMCVPLIDYYTKPRTYGHKKG

Sequences:

>Translated_351_residues
MAFFITSSPHAHSKKSTQTMMKMVALATIPGLLAQTYFFGWGTLLQVLLAIITAILAEAFVLKCRKRPLAPYLKDNSALL
TGLLLALAIPPLSPWWLTVIGVFFAIVIAKHLYGGLGQNLFNPAMAAYVVLLISFPVQMTTWLPAKELLVEHISFMDSVW
LIFHGLSQDGFSVHQLTMNVDGMTMATPLDTVKTGLKAGLTTNEILSAPIFNGFAGLGWLWVNVGFLLGGLFLLQQRLIH
WHIPVSFLASLFIVSSLFAVFSPDTTTSPIFNLFSGATMLGAFFIATDPVSAATTNKGRLYYGALIGLLVYMIRSWGGFP
DGVAFAVLLANMCVPLIDYYTKPRTYGHKKG
>Mature_350_residues
AFFITSSPHAHSKKSTQTMMKMVALATIPGLLAQTYFFGWGTLLQVLLAIITAILAEAFVLKCRKRPLAPYLKDNSALLT
GLLLALAIPPLSPWWLTVIGVFFAIVIAKHLYGGLGQNLFNPAMAAYVVLLISFPVQMTTWLPAKELLVEHISFMDSVWL
IFHGLSQDGFSVHQLTMNVDGMTMATPLDTVKTGLKAGLTTNEILSAPIFNGFAGLGWLWVNVGFLLGGLFLLQQRLIHW
HIPVSFLASLFIVSSLFAVFSPDTTTSPIFNLFSGATMLGAFFIATDPVSAATTNKGRLYYGALIGLLVYMIRSWGGFPD
GVAFAVLLANMCVPLIDYYTKPRTYGHKKG

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family

Homologues:

Organism=Escherichia coli, GI1787917, Length=352, Percent_Identity=59.6590909090909, Blast_Score=433, Evalue=1e-123,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFD_ALISL (B6EGH4)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002263265.1
- GeneID:   6989136
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I1869
- HOGENOM:   HBG454412
- OMA:   NPAMVAY
- ProtClustDB:   CLSK2396056
- GO:   GO:0006810
- HAMAP:   MF_00462
- InterPro:   IPR011303
- InterPro:   IPR004338
- TIGRFAMs:   TIGR01946

Pfam domain/function: PF03116 NQR2_RnfD_RnfE

EC number: NA

Molecular weight: Translated: 38331; Mature: 38200

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x21296c88)-; HASH(0x20db86b4)-; HASH(0x20a12728)-; HASH(0x20ea7b54)-; HASH(0x2131c9d0)-; HASH(0x2107f128)-; HASH(0x208016d4)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFFITSSPHAHSKKSTQTMMKMVALATIPGLLAQTYFFGWGTLLQVLLAIITAILAEAF
CEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLKCRKRPLAPYLKDNSALLTGLLLALAIPPLSPWWLTVIGVFFAIVIAKHLYGGLGQNL
HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FNPAMAAYVVLLISFPVQMTTWLPAKELLVEHISFMDSVWLIFHGLSQDGFSVHQLTMNV
HHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
DGMTMATPLDTVKTGLKAGLTTNEILSAPIFNGFAGLGWLWVNVGFLLGGLFLLQQRLIH
CCCEECCCHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WHIPVSFLASLFIVSSLFAVFSPDTTTSPIFNLFSGATMLGAFFIATDPVSAATTNKGRL
HCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
YYGALIGLLVYMIRSWGGFPDGVAFAVLLANMCVPLIDYYTKPRTYGHKKG
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
>Mature Secondary Structure 
AFFITSSPHAHSKKSTQTMMKMVALATIPGLLAQTYFFGWGTLLQVLLAIITAILAEAF
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLKCRKRPLAPYLKDNSALLTGLLLALAIPPLSPWWLTVIGVFFAIVIAKHLYGGLGQNL
HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FNPAMAAYVVLLISFPVQMTTWLPAKELLVEHISFMDSVWLIFHGLSQDGFSVHQLTMNV
HHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
DGMTMATPLDTVKTGLKAGLTTNEILSAPIFNGFAGLGWLWVNVGFLLGGLFLLQQRLIH
CCCEECCCHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WHIPVSFLASLFIVSSLFAVFSPDTTTSPIFNLFSGATMLGAFFIATDPVSAATTNKGRL
HCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
YYGALIGLLVYMIRSWGGFPDGVAFAVLLANMCVPLIDYYTKPRTYGHKKG
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA