Click here to switch to the map view.

The map label for this gene is rnfG

Identifier: 209695335

GI number: 209695335

Start: 2001964

End: 2002596

Strand: Reverse

Name: rnfG

Synonym: VSAL_I1868

Alternate gene names: 209695335

Gene position: 2002596-2001964 (Counterclockwise)

Preceding gene: 209695336

Following gene: 209695334

Centisome position: 60.23

GC content: 41.07

Gene sequence:

>633_bases
ATGCTTACTATAATGAAAAAAAGCAGCCTTGTTTTGGCTCTGTTTGCGATTGCAGCGACCTCTTTAGTAATGATTACTTA
TGCGTTAACTAAAGATCAAATTGCTTATCAACAACAGCAGCAATTGCTATCTGTTCTTAATCAAGTTGTACCAAAAGAAC
AGCACGATAACGAATTATTTAAAGCCTGCACTCTTGTGAATAATATTGATGCTTTAGGGACAAATACCCCAATGCCTATT
TATTTAGCAAGCATGAATGGCAAGCATACTGGAGCGGCGATTGAAGCCATTGCTCCTGATGGCTACAGCGGTGCAATAAA
GATCATTGTTGGTGTTGATTCAGACTCGATAGTAACAGGGGTTCGCGTATTATCTCATCAAGAAACACCTGGATTAGGCG
ATAAAATAGATACTAGAATCACTCGATGGGTTGATGGTTTTCTAGGTAAGACCGTAGATTCTGCTGACGACAGCAGTTGG
GCTGTTCAAAAAGATGGTGGGCAATTCGACCAATTCACAGGGGCAACTATTACACCGCGAGCCGTAGTGAAAGCCGTGAA
AAGAGCGGTTTGGTTCTATAAAACACATCAAGACGAGCTACAAACTCTCCCACTTAATTGCGAGGTGAAATAA

Upstream 100 bases:

>100_bases
GGATGGCGTTGCTTTTGCCGTTCTATTGGCAAACATGTGTGTCCCCCTTATTGATTATTACACTAAACCAAGAACTTACG
GCCATAAGAAAGGATAAAAC

Downstream 100 bases:

>100_bases
TGGCAACTCATAAAGAATTAATCAAAAATGGGTTATGGGATAACAACCCCGCTTTAGTCCAATTACTTGGTCTATGCCCA
TTATTAGCAGTCTCTGCAAC

Product: electron transport complex protein RnfG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MLTIMKKSSLVLALFAIAATSLVMITYALTKDQIAYQQQQQLLSVLNQVVPKEQHDNELFKACTLVNNIDALGTNTPMPI
YLASMNGKHTGAAIEAIAPDGYSGAIKIIVGVDSDSIVTGVRVLSHQETPGLGDKIDTRITRWVDGFLGKTVDSADDSSW
AVQKDGGQFDQFTGATITPRAVVKAVKRAVWFYKTHQDELQTLPLNCEVK

Sequences:

>Translated_210_residues
MLTIMKKSSLVLALFAIAATSLVMITYALTKDQIAYQQQQQLLSVLNQVVPKEQHDNELFKACTLVNNIDALGTNTPMPI
YLASMNGKHTGAAIEAIAPDGYSGAIKIIVGVDSDSIVTGVRVLSHQETPGLGDKIDTRITRWVDGFLGKTVDSADDSSW
AVQKDGGQFDQFTGATITPRAVVKAVKRAVWFYKTHQDELQTLPLNCEVK
>Mature_210_residues
MLTIMKKSSLVLALFAIAATSLVMITYALTKDQIAYQQQQQLLSVLNQVVPKEQHDNELFKACTLVNNIDALGTNTPMPI
YLASMNGKHTGAAIEAIAPDGYSGAIKIIVGVDSDSIVTGVRVLSHQETPGLGDKIDTRITRWVDGFLGKTVDSADDSSW
AVQKDGGQFDQFTGATITPRAVVKAVKRAVWFYKTHQDELQTLPLNCEVK

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4659

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfG

Gene ontology:

Cell location: Cell inner membrane (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnfG family

Homologues:

Organism=Escherichia coli, GI1787918, Length=208, Percent_Identity=47.5961538461538, Blast_Score=190, Evalue=5e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFG_ALISL (B6EGH3)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002263264.1
- GeneID:   6989135
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I1868
- HOGENOM:   HBG454413
- OMA:   DAVTEVN
- ProtClustDB:   PRK01908
- GO:   GO:0006810
- HAMAP:   MF_00479
- InterPro:   IPR022989
- InterPro:   IPR010209
- InterPro:   IPR007329
- SMART:   SM00900
- TIGRFAMs:   TIGR01947

Pfam domain/function: PF04205 FMN_bind

EC number: NA

Molecular weight: Translated: 22851; Mature: 22851

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x2132b2d8)-;

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTIMKKSSLVLALFAIAATSLVMITYALTKDQIAYQQQQQLLSVLNQVVPKEQHDNELF
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
KACTLVNNIDALGTNTPMPIYLASMNGKHTGAAIEAIAPDGYSGAIKIIVGVDSDSIVTG
HHHHHHHCCHHCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCEEEEEEECCCCHHHHH
VRVLSHQETPGLGDKIDTRITRWVDGFLGKTVDSADDSSWAVQKDGGQFDQFTGATITPR
HHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHH
AVVKAVKRAVWFYKTHQDELQTLPLNCEVK
HHHHHHHHHHHHHHCCHHHHHCCCCCEECH
>Mature Secondary Structure
MLTIMKKSSLVLALFAIAATSLVMITYALTKDQIAYQQQQQLLSVLNQVVPKEQHDNELF
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
KACTLVNNIDALGTNTPMPIYLASMNGKHTGAAIEAIAPDGYSGAIKIIVGVDSDSIVTG
HHHHHHHCCHHCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCEEEEEEECCCCHHHHH
VRVLSHQETPGLGDKIDTRITRWVDGFLGKTVDSADDSSWAVQKDGGQFDQFTGATITPR
HHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHH
AVVKAVKRAVWFYKTHQDELQTLPLNCEVK
HHHHHHHHHHHHHHCCHHHHHCCCCCEECH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA