| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695327
Identifier: 209695327
GI number: 209695327
Start: 1994990
End: 1996288
Strand: Reverse
Name: 209695327
Synonym: VSAL_I1860
Alternate gene names: NA
Gene position: 1996288-1994990 (Counterclockwise)
Preceding gene: 209695328
Following gene: 209695325
Centisome position: 60.04
GC content: 38.65
Gene sequence:
>1299_bases ATGAAATTAATTAAGCTCTCTTCTTTTCTCATTATCGATGACAGTAGCGTTATTCAAAACGCCATTCGAGCCTTATTAAG TCGTATAGGTGTTCCAACTAATAACATCGCTTGTTGCCCCACCGCAGGTGCCGCCGTTGGTAATTGTAAACGTCAAAAGT ATGATGTTCTCTTTGTTGATCATAATTTAGGCCATGGCAGCACTGGTTTACAGATGCTAGAACAACTGCGTCTATTAAAA CTGATTAATGACAACACGCTAGTCTATATAGTCACAGGTAATGAAGACCCTCAAATAGAGTTAGCCTATACCGACTATTC TCCATCTAAATATATACAAAAGCCCATACGCCCAGAAGAGATAATCAACGTCATTAATAGTGATTTAATTAAACGTCAAT TTGCGATGGCGATGATTGGAGCTTATACAAAGCAAGGATTAGCCGGTGTAAAACCACTGATTTTCAAGTCACCAAACAAA ATCATTCTACAAACAGCCATGCTAAAACTTGCAAATCGATTAATTAAAGTTAACCGATTATCTGAAGCATTGAGCGTAAA CAAGGCCTTAATATCCATTGTAAAAGAATCTGTTGAAGCCGATATTCAACGCGCTGAAATATGTATTGCACAAGTCGATT ATAATTCTGCAAACCAGTTACTCGATACTCTATTACAAAAAAATGAAAGCCATTTAAAATTACTGGATTTAAAAGCAGAG ATCGCCTTTAACACCGATAATATTGCTCTCGCCACCCGCTATTGGAAAAAAGCATTTGAACTAGCTCCTTATTCTTATAT GCGATTTAGCTACTTAATTTGGTCTCTTCTTGCAAAGGGAGACCGCTATGATGCCTTTGATTTACTGACAAAATACGCGT ATCTCTTACCCCACTCTGCTTTTGATTCCGCCGGCAGAAGAGCCTTAACCGCTTGGGCTGATATGCATGTTGCACCCGAG GAAATCCTGCAAGAATGGTCACCAGAGAGCTCATGGCAACGTGTTAGTGCAAAACTAAAAGGCCGATTAAGAGGAATACC AAGTATTGCAGCCCAGCGCGCATTATCTGCATTATGGCAGCTTAAAATGAATCGTTACGGTGAAGCAAATCGCCTTATAT CTGACATTCAACTGTCTGACATTACTGATTATGAAACCGCTTATATCGTTTATCTCGTGTATTGTGAGATGAAATTAGAT GATGAGAAAAAAATAATTGAAGACAAATGGTTGGCGAAGCTAAGACAGGGGAAAAGCATTCTTGCGAAATTACAAACGTT AGTTTTCGAGAAAGCATAA
Upstream 100 bases:
>100_bases ATTAAGATCATAAAATTATTTCTTCCTATCCTTTCTTTACCCTATATTTCCCATAACTATTGCTATACTCTGCCACTCTT TAAAATCACCTATCATTCTC
Downstream 100 bases:
>100_bases CAAACAACAGCAATTAAAAAAGCCACTTATCTCTACAATAAGTGGCTTTTTTATACGATAAATATAAATAAGGTTAATTA TCTATATTCACTTAAAAGAT
Product: response regulator
Products: NA
Alternate protein names: Response Regulator; Response Regulator/TPR Domain Protein
Number of amino acids: Translated: 432; Mature: 432
Protein sequence:
>432_residues MKLIKLSSFLIIDDSSVIQNAIRALLSRIGVPTNNIACCPTAGAAVGNCKRQKYDVLFVDHNLGHGSTGLQMLEQLRLLK LINDNTLVYIVTGNEDPQIELAYTDYSPSKYIQKPIRPEEIINVINSDLIKRQFAMAMIGAYTKQGLAGVKPLIFKSPNK IILQTAMLKLANRLIKVNRLSEALSVNKALISIVKESVEADIQRAEICIAQVDYNSANQLLDTLLQKNESHLKLLDLKAE IAFNTDNIALATRYWKKAFELAPYSYMRFSYLIWSLLAKGDRYDAFDLLTKYAYLLPHSAFDSAGRRALTAWADMHVAPE EILQEWSPESSWQRVSAKLKGRLRGIPSIAAQRALSALWQLKMNRYGEANRLISDIQLSDITDYETAYIVYLVYCEMKLD DEKKIIEDKWLAKLRQGKSILAKLQTLVFEKA
Sequences:
>Translated_432_residues MKLIKLSSFLIIDDSSVIQNAIRALLSRIGVPTNNIACCPTAGAAVGNCKRQKYDVLFVDHNLGHGSTGLQMLEQLRLLK LINDNTLVYIVTGNEDPQIELAYTDYSPSKYIQKPIRPEEIINVINSDLIKRQFAMAMIGAYTKQGLAGVKPLIFKSPNK IILQTAMLKLANRLIKVNRLSEALSVNKALISIVKESVEADIQRAEICIAQVDYNSANQLLDTLLQKNESHLKLLDLKAE IAFNTDNIALATRYWKKAFELAPYSYMRFSYLIWSLLAKGDRYDAFDLLTKYAYLLPHSAFDSAGRRALTAWADMHVAPE EILQEWSPESSWQRVSAKLKGRLRGIPSIAAQRALSALWQLKMNRYGEANRLISDIQLSDITDYETAYIVYLVYCEMKLD DEKKIIEDKWLAKLRQGKSILAKLQTLVFEKA >Mature_432_residues MKLIKLSSFLIIDDSSVIQNAIRALLSRIGVPTNNIACCPTAGAAVGNCKRQKYDVLFVDHNLGHGSTGLQMLEQLRLLK LINDNTLVYIVTGNEDPQIELAYTDYSPSKYIQKPIRPEEIINVINSDLIKRQFAMAMIGAYTKQGLAGVKPLIFKSPNK IILQTAMLKLANRLIKVNRLSEALSVNKALISIVKESVEADIQRAEICIAQVDYNSANQLLDTLLQKNESHLKLLDLKAE IAFNTDNIALATRYWKKAFELAPYSYMRFSYLIWSLLAKGDRYDAFDLLTKYAYLLPHSAFDSAGRRALTAWADMHVAPE EILQEWSPESSWQRVSAKLKGRLRGIPSIAAQRALSALWQLKMNRYGEANRLISDIQLSDITDYETAYIVYLVYCEMKLD DEKKIIEDKWLAKLRQGKSILAKLQTLVFEKA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48868; Mature: 48868
Theoretical pI: Translated: 9.32; Mature: 9.32
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLIKLSSFLIIDDSSVIQNAIRALLSRIGVPTNNIACCPTAGAAVGNCKRQKYDVLFVD CCEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHCCCCCCEEEEEEEE HNLGHGSTGLQMLEQLRLLKLINDNTLVYIVTGNEDPQIELAYTDYSPSKYIQKPIRPEE CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCCHHHHHCCCCHHH IINVINSDLIKRQFAMAMIGAYTKQGLAGVKPLIFKSPNKIILQTAMLKLANRLIKVNRL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHH SEALSVNKALISIVKESVEADIQRAEICIAQVDYNSANQLLDTLLQKNESHLKLLDLKAE HHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEEE IAFNTDNIALATRYWKKAFELAPYSYMRFSYLIWSLLAKGDRYDAFDLLTKYAYLLPHSA EEECCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH FDSAGRRALTAWADMHVAPEEILQEWSPESSWQRVSAKLKGRLRGIPSIAAQRALSALWQ HHHCCCHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH LKMNRYGEANRLISDIQLSDITDYETAYIVYLVYCEMKLDDEKKIIEDKWLAKLRQGKSI HHHHCCCCHHHHHHHCCCCCCCCCCHHEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHH LAKLQTLVFEKA HHHHHHHHHCCC >Mature Secondary Structure MKLIKLSSFLIIDDSSVIQNAIRALLSRIGVPTNNIACCPTAGAAVGNCKRQKYDVLFVD CCEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHCCCCCCEEEEEEEE HNLGHGSTGLQMLEQLRLLKLINDNTLVYIVTGNEDPQIELAYTDYSPSKYIQKPIRPEE CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCCHHHHHCCCCHHH IINVINSDLIKRQFAMAMIGAYTKQGLAGVKPLIFKSPNKIILQTAMLKLANRLIKVNRL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHH SEALSVNKALISIVKESVEADIQRAEICIAQVDYNSANQLLDTLLQKNESHLKLLDLKAE HHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEEE IAFNTDNIALATRYWKKAFELAPYSYMRFSYLIWSLLAKGDRYDAFDLLTKYAYLLPHSA EEECCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH FDSAGRRALTAWADMHVAPEEILQEWSPESSWQRVSAKLKGRLRGIPSIAAQRALSALWQ HHHCCCHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH LKMNRYGEANRLISDIQLSDITDYETAYIVYLVYCEMKLDDEKKIIEDKWLAKLRQGKSI HHHHCCCCHHHHHHHCCCCCCCCCCHHEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHH LAKLQTLVFEKA HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA