Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695327

Identifier: 209695327

GI number: 209695327

Start: 1994990

End: 1996288

Strand: Reverse

Name: 209695327

Synonym: VSAL_I1860

Alternate gene names: NA

Gene position: 1996288-1994990 (Counterclockwise)

Preceding gene: 209695328

Following gene: 209695325

Centisome position: 60.04

GC content: 38.65

Gene sequence:

>1299_bases
ATGAAATTAATTAAGCTCTCTTCTTTTCTCATTATCGATGACAGTAGCGTTATTCAAAACGCCATTCGAGCCTTATTAAG
TCGTATAGGTGTTCCAACTAATAACATCGCTTGTTGCCCCACCGCAGGTGCCGCCGTTGGTAATTGTAAACGTCAAAAGT
ATGATGTTCTCTTTGTTGATCATAATTTAGGCCATGGCAGCACTGGTTTACAGATGCTAGAACAACTGCGTCTATTAAAA
CTGATTAATGACAACACGCTAGTCTATATAGTCACAGGTAATGAAGACCCTCAAATAGAGTTAGCCTATACCGACTATTC
TCCATCTAAATATATACAAAAGCCCATACGCCCAGAAGAGATAATCAACGTCATTAATAGTGATTTAATTAAACGTCAAT
TTGCGATGGCGATGATTGGAGCTTATACAAAGCAAGGATTAGCCGGTGTAAAACCACTGATTTTCAAGTCACCAAACAAA
ATCATTCTACAAACAGCCATGCTAAAACTTGCAAATCGATTAATTAAAGTTAACCGATTATCTGAAGCATTGAGCGTAAA
CAAGGCCTTAATATCCATTGTAAAAGAATCTGTTGAAGCCGATATTCAACGCGCTGAAATATGTATTGCACAAGTCGATT
ATAATTCTGCAAACCAGTTACTCGATACTCTATTACAAAAAAATGAAAGCCATTTAAAATTACTGGATTTAAAAGCAGAG
ATCGCCTTTAACACCGATAATATTGCTCTCGCCACCCGCTATTGGAAAAAAGCATTTGAACTAGCTCCTTATTCTTATAT
GCGATTTAGCTACTTAATTTGGTCTCTTCTTGCAAAGGGAGACCGCTATGATGCCTTTGATTTACTGACAAAATACGCGT
ATCTCTTACCCCACTCTGCTTTTGATTCCGCCGGCAGAAGAGCCTTAACCGCTTGGGCTGATATGCATGTTGCACCCGAG
GAAATCCTGCAAGAATGGTCACCAGAGAGCTCATGGCAACGTGTTAGTGCAAAACTAAAAGGCCGATTAAGAGGAATACC
AAGTATTGCAGCCCAGCGCGCATTATCTGCATTATGGCAGCTTAAAATGAATCGTTACGGTGAAGCAAATCGCCTTATAT
CTGACATTCAACTGTCTGACATTACTGATTATGAAACCGCTTATATCGTTTATCTCGTGTATTGTGAGATGAAATTAGAT
GATGAGAAAAAAATAATTGAAGACAAATGGTTGGCGAAGCTAAGACAGGGGAAAAGCATTCTTGCGAAATTACAAACGTT
AGTTTTCGAGAAAGCATAA

Upstream 100 bases:

>100_bases
ATTAAGATCATAAAATTATTTCTTCCTATCCTTTCTTTACCCTATATTTCCCATAACTATTGCTATACTCTGCCACTCTT
TAAAATCACCTATCATTCTC

Downstream 100 bases:

>100_bases
CAAACAACAGCAATTAAAAAAGCCACTTATCTCTACAATAAGTGGCTTTTTTATACGATAAATATAAATAAGGTTAATTA
TCTATATTCACTTAAAAGAT

Product: response regulator

Products: NA

Alternate protein names: Response Regulator; Response Regulator/TPR Domain Protein

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MKLIKLSSFLIIDDSSVIQNAIRALLSRIGVPTNNIACCPTAGAAVGNCKRQKYDVLFVDHNLGHGSTGLQMLEQLRLLK
LINDNTLVYIVTGNEDPQIELAYTDYSPSKYIQKPIRPEEIINVINSDLIKRQFAMAMIGAYTKQGLAGVKPLIFKSPNK
IILQTAMLKLANRLIKVNRLSEALSVNKALISIVKESVEADIQRAEICIAQVDYNSANQLLDTLLQKNESHLKLLDLKAE
IAFNTDNIALATRYWKKAFELAPYSYMRFSYLIWSLLAKGDRYDAFDLLTKYAYLLPHSAFDSAGRRALTAWADMHVAPE
EILQEWSPESSWQRVSAKLKGRLRGIPSIAAQRALSALWQLKMNRYGEANRLISDIQLSDITDYETAYIVYLVYCEMKLD
DEKKIIEDKWLAKLRQGKSILAKLQTLVFEKA

Sequences:

>Translated_432_residues
MKLIKLSSFLIIDDSSVIQNAIRALLSRIGVPTNNIACCPTAGAAVGNCKRQKYDVLFVDHNLGHGSTGLQMLEQLRLLK
LINDNTLVYIVTGNEDPQIELAYTDYSPSKYIQKPIRPEEIINVINSDLIKRQFAMAMIGAYTKQGLAGVKPLIFKSPNK
IILQTAMLKLANRLIKVNRLSEALSVNKALISIVKESVEADIQRAEICIAQVDYNSANQLLDTLLQKNESHLKLLDLKAE
IAFNTDNIALATRYWKKAFELAPYSYMRFSYLIWSLLAKGDRYDAFDLLTKYAYLLPHSAFDSAGRRALTAWADMHVAPE
EILQEWSPESSWQRVSAKLKGRLRGIPSIAAQRALSALWQLKMNRYGEANRLISDIQLSDITDYETAYIVYLVYCEMKLD
DEKKIIEDKWLAKLRQGKSILAKLQTLVFEKA
>Mature_432_residues
MKLIKLSSFLIIDDSSVIQNAIRALLSRIGVPTNNIACCPTAGAAVGNCKRQKYDVLFVDHNLGHGSTGLQMLEQLRLLK
LINDNTLVYIVTGNEDPQIELAYTDYSPSKYIQKPIRPEEIINVINSDLIKRQFAMAMIGAYTKQGLAGVKPLIFKSPNK
IILQTAMLKLANRLIKVNRLSEALSVNKALISIVKESVEADIQRAEICIAQVDYNSANQLLDTLLQKNESHLKLLDLKAE
IAFNTDNIALATRYWKKAFELAPYSYMRFSYLIWSLLAKGDRYDAFDLLTKYAYLLPHSAFDSAGRRALTAWADMHVAPE
EILQEWSPESSWQRVSAKLKGRLRGIPSIAAQRALSALWQLKMNRYGEANRLISDIQLSDITDYETAYIVYLVYCEMKLD
DEKKIIEDKWLAKLRQGKSILAKLQTLVFEKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48868; Mature: 48868

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLIKLSSFLIIDDSSVIQNAIRALLSRIGVPTNNIACCPTAGAAVGNCKRQKYDVLFVD
CCEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHCCCCCCEEEEEEEE
HNLGHGSTGLQMLEQLRLLKLINDNTLVYIVTGNEDPQIELAYTDYSPSKYIQKPIRPEE
CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCCHHHHHCCCCHHH
IINVINSDLIKRQFAMAMIGAYTKQGLAGVKPLIFKSPNKIILQTAMLKLANRLIKVNRL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHH
SEALSVNKALISIVKESVEADIQRAEICIAQVDYNSANQLLDTLLQKNESHLKLLDLKAE
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEEE
IAFNTDNIALATRYWKKAFELAPYSYMRFSYLIWSLLAKGDRYDAFDLLTKYAYLLPHSA
EEECCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH
FDSAGRRALTAWADMHVAPEEILQEWSPESSWQRVSAKLKGRLRGIPSIAAQRALSALWQ
HHHCCCHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LKMNRYGEANRLISDIQLSDITDYETAYIVYLVYCEMKLDDEKKIIEDKWLAKLRQGKSI
HHHHCCCCHHHHHHHCCCCCCCCCCHHEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHH
LAKLQTLVFEKA
HHHHHHHHHCCC
>Mature Secondary Structure
MKLIKLSSFLIIDDSSVIQNAIRALLSRIGVPTNNIACCPTAGAAVGNCKRQKYDVLFVD
CCEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHCCCCCCEEEEEEEE
HNLGHGSTGLQMLEQLRLLKLINDNTLVYIVTGNEDPQIELAYTDYSPSKYIQKPIRPEE
CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCCHHHHHCCCCHHH
IINVINSDLIKRQFAMAMIGAYTKQGLAGVKPLIFKSPNKIILQTAMLKLANRLIKVNRL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHH
SEALSVNKALISIVKESVEADIQRAEICIAQVDYNSANQLLDTLLQKNESHLKLLDLKAE
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEEE
IAFNTDNIALATRYWKKAFELAPYSYMRFSYLIWSLLAKGDRYDAFDLLTKYAYLLPHSA
EEECCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH
FDSAGRRALTAWADMHVAPEEILQEWSPESSWQRVSAKLKGRLRGIPSIAAQRALSALWQ
HHHCCCHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LKMNRYGEANRLISDIQLSDITDYETAYIVYLVYCEMKLDDEKKIIEDKWLAKLRQGKSI
HHHHCCCCHHHHHHHCCCCCCCCCCHHEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHH
LAKLQTLVFEKA
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA