| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209695321
Identifier: 209695321
GI number: 209695321
Start: 1987870
End: 1988718
Strand: Reverse
Name: 209695321
Synonym: VSAL_I1854
Alternate gene names: NA
Gene position: 1988718-1987870 (Counterclockwise)
Preceding gene: 209695323
Following gene: 209695318
Centisome position: 59.81
GC content: 35.34
Gene sequence:
>849_bases ATGAATAATAAGAATATTAAACATTATCTCTACATTACTATTTTTGGAACTCATACAAAGGGGGGACGAGCTTTTGACAT TGGATTGATATGTTTAATTCTAGCTTCTCAGGCAACCTTAATTTTAGACTCAATGGCATCAGTTAAAGCTGAGTATGGTG AACTATTATGGACATTGGAATATATCTTCACTGCATTTTTCACGCTTGAATATTTTTTACGTCTTTATTGCTCACCAAAA CCGGCTTCTTACGCTAAAAGCTTTTATGGCATTATTGATGTATTAGCTATTTTACCTACTTACCTAGCTCTCTTTTTCCC AAGTGCGAGTTATATTGCCATTATTCGTCTTTTACGTGTAATGAGAATATTTAGAGTCTTAAAACTGGTTCGATACTTAC AAGACTCAAACATACTTTTACGTTCATTGTTAATGGCAAAAAGAAAAATTCTGATCTTCTTTAGCACCGTTGCTATTTTA GTCTCTGTTTTTGGTTCATTAATGTTTGTTATTGAAGGACCAAATAATGGGTTTACGAGTATTCCCCAAAGTATTTATTG GGCTATCGTGACCATTACCACAGTAGGCTATGGTGATTTAGTTCCACACACTGCGTTAGGTAAAGCGGTGGCTTCATTAA CGATGTTATTAGGTTATTCAATATTAGCGGTACCAACAGGAATAATTACAGCAGAATTAAATCAAGAGATGAATGCACAT CGAGATCTTGTGCGTTGTCCAAATTGCGTTAAAGGTGGGCATGAATCAGATGCGATGCACTGTAAGCATTGTGGAAGTAA ACTACCTGAGCCTCAGGAAAGAATAGTAAGACCAAATCAAAATAGATAG
Upstream 100 bases:
>100_bases GTATTAACCGTTGTGGGGATCTTCCCTATTTCAAAGTTCTACTGGAGAGAGTGGCTTTTTTTGATTATTCTGGAGTTATG ATAAGACTTGGCACTTAACG
Downstream 100 bases:
>100_bases AAAATAGAATTAAGATTATTCAGTATAAAGGACAAGTGTACTCTGAGACACATTTGGAGTCGTATCGCTTCCTAAGAATT TTGGTGCAGCAATTATAGCA
Product: ion transport protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 282; Mature: 282
Protein sequence:
>282_residues MNNKNIKHYLYITIFGTHTKGGRAFDIGLICLILASQATLILDSMASVKAEYGELLWTLEYIFTAFFTLEYFLRLYCSPK PASYAKSFYGIIDVLAILPTYLALFFPSASYIAIIRLLRVMRIFRVLKLVRYLQDSNILLRSLLMAKRKILIFFSTVAIL VSVFGSLMFVIEGPNNGFTSIPQSIYWAIVTITTVGYGDLVPHTALGKAVASLTMLLGYSILAVPTGIITAELNQEMNAH RDLVRCPNCVKGGHESDAMHCKHCGSKLPEPQERIVRPNQNR
Sequences:
>Translated_282_residues MNNKNIKHYLYITIFGTHTKGGRAFDIGLICLILASQATLILDSMASVKAEYGELLWTLEYIFTAFFTLEYFLRLYCSPK PASYAKSFYGIIDVLAILPTYLALFFPSASYIAIIRLLRVMRIFRVLKLVRYLQDSNILLRSLLMAKRKILIFFSTVAIL VSVFGSLMFVIEGPNNGFTSIPQSIYWAIVTITTVGYGDLVPHTALGKAVASLTMLLGYSILAVPTGIITAELNQEMNAH RDLVRCPNCVKGGHESDAMHCKHCGSKLPEPQERIVRPNQNR >Mature_282_residues MNNKNIKHYLYITIFGTHTKGGRAFDIGLICLILASQATLILDSMASVKAEYGELLWTLEYIFTAFFTLEYFLRLYCSPK PASYAKSFYGIIDVLAILPTYLALFFPSASYIAIIRLLRVMRIFRVLKLVRYLQDSNILLRSLLMAKRKILIFFSTVAIL VSVFGSLMFVIEGPNNGFTSIPQSIYWAIVTITTVGYGDLVPHTALGKAVASLTMLLGYSILAVPTGIITAELNQEMNAH RDLVRCPNCVKGGHESDAMHCKHCGSKLPEPQERIVRPNQNR
Specific function: Unknown
COG id: COG1226
COG function: function code P; Kef-type K+ transport systems, predicted NAD-binding component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cyclic nucleotide-binding domain [H]
Homologues:
Organism=Homo sapiens, GI20070166, Length=197, Percent_Identity=38.0710659898477, Blast_Score=121, Evalue=8e-28, Organism=Homo sapiens, GI88758565, Length=237, Percent_Identity=30.8016877637131, Blast_Score=118, Evalue=6e-27, Organism=Homo sapiens, GI27436974, Length=223, Percent_Identity=35.4260089686099, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI4826784, Length=229, Percent_Identity=34.061135371179, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI25952087, Length=189, Percent_Identity=34.3915343915344, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI27436981, Length=192, Percent_Identity=36.4583333333333, Blast_Score=110, Evalue=1e-24, Organism=Homo sapiens, GI4504817, Length=223, Percent_Identity=30.0448430493274, Blast_Score=109, Evalue=4e-24, Organism=Homo sapiens, GI27436984, Length=229, Percent_Identity=32.7510917030568, Blast_Score=108, Evalue=7e-24, Organism=Homo sapiens, GI27436986, Length=229, Percent_Identity=32.7510917030568, Blast_Score=107, Evalue=9e-24, Organism=Homo sapiens, GI4826782, Length=208, Percent_Identity=30.7692307692308, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI9789987, Length=201, Percent_Identity=34.8258706467662, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI25952092, Length=194, Percent_Identity=31.9587628865979, Blast_Score=105, Evalue=5e-23, Organism=Homo sapiens, GI25952108, Length=237, Percent_Identity=31.6455696202532, Blast_Score=105, Evalue=5e-23, Organism=Homo sapiens, GI119395748, Length=198, Percent_Identity=30.3030303030303, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI4504821, Length=206, Percent_Identity=30.0970873786408, Blast_Score=101, Evalue=9e-22, Organism=Homo sapiens, GI13492973, Length=186, Percent_Identity=34.9462365591398, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI27436996, Length=234, Percent_Identity=31.1965811965812, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI27436988, Length=191, Percent_Identity=34.0314136125654, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI45383011, Length=223, Percent_Identity=30.0448430493274, Blast_Score=98, Evalue=8e-21, Organism=Homo sapiens, GI19424136, Length=236, Percent_Identity=30.9322033898305, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI5031819, Length=181, Percent_Identity=33.1491712707182, Blast_Score=95, Evalue=8e-20, Organism=Homo sapiens, GI88758576, Length=198, Percent_Identity=30.3030303030303, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI24497462, Length=198, Percent_Identity=30.3030303030303, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI7657289, Length=204, Percent_Identity=36.7647058823529, Blast_Score=92, Evalue=7e-19, Organism=Homo sapiens, GI27436993, Length=185, Percent_Identity=31.3513513513514, Blast_Score=91, Evalue=9e-19, Organism=Homo sapiens, GI26638655, Length=235, Percent_Identity=28.0851063829787, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI19071574, Length=185, Percent_Identity=31.3513513513514, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI26638653, Length=235, Percent_Identity=28.0851063829787, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI24497458, Length=188, Percent_Identity=30.8510638297872, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI21217561, Length=188, Percent_Identity=30.8510638297872, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI163792201, Length=198, Percent_Identity=30.3030303030303, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI4826786, Length=198, Percent_Identity=30.3030303030303, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI21217563, Length=188, Percent_Identity=30.8510638297872, Blast_Score=90, Evalue=3e-18, Organism=Homo sapiens, GI24497460, Length=204, Percent_Identity=30.3921568627451, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI6912444, Length=231, Percent_Identity=29.4372294372294, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI26051268, Length=235, Percent_Identity=25.1063829787234, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI32479525, Length=224, Percent_Identity=29.4642857142857, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI32479527, Length=224, Percent_Identity=29.4642857142857, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI26051266, Length=235, Percent_Identity=25.9574468085106, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI236462242, Length=222, Percent_Identity=26.5765765765766, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI26051264, Length=235, Percent_Identity=25.9574468085106, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI26051262, Length=235, Percent_Identity=25.9574468085106, Blast_Score=79, Evalue=7e-15, Organism=Homo sapiens, GI26051260, Length=235, Percent_Identity=25.9574468085106, Blast_Score=79, Evalue=7e-15, Organism=Homo sapiens, GI28373065, Length=184, Percent_Identity=28.2608695652174, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI236461719, Length=184, Percent_Identity=28.2608695652174, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI236462079, Length=184, Percent_Identity=28.2608695652174, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI236461942, Length=222, Percent_Identity=26.5765765765766, Blast_Score=78, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71989381, Length=213, Percent_Identity=31.924882629108, Blast_Score=114, Evalue=6e-26, Organism=Caenorhabditis elegans, GI71989376, Length=213, Percent_Identity=31.924882629108, Blast_Score=114, Evalue=6e-26, Organism=Caenorhabditis elegans, GI71989369, Length=213, Percent_Identity=31.924882629108, Blast_Score=114, Evalue=7e-26, Organism=Caenorhabditis elegans, GI71989361, Length=213, Percent_Identity=31.924882629108, Blast_Score=114, Evalue=7e-26, Organism=Caenorhabditis elegans, GI17544122, Length=213, Percent_Identity=30.5164319248826, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI71994313, Length=249, Percent_Identity=31.7269076305221, Blast_Score=107, Evalue=9e-24, Organism=Caenorhabditis elegans, GI71994134, Length=230, Percent_Identity=33.4782608695652, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17569273, Length=231, Percent_Identity=28.5714285714286, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI193206869, Length=288, Percent_Identity=26.0416666666667, Blast_Score=100, Evalue=7e-22, Organism=Caenorhabditis elegans, GI25148255, Length=198, Percent_Identity=30.3030303030303, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI71994320, Length=220, Percent_Identity=32.7272727272727, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI115532628, Length=232, Percent_Identity=34.4827586206897, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI71998749, Length=232, Percent_Identity=34.4827586206897, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI32564074, Length=232, Percent_Identity=34.4827586206897, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI32564068, Length=232, Percent_Identity=34.4827586206897, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI32564072, Length=232, Percent_Identity=34.4827586206897, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI32564070, Length=232, Percent_Identity=34.4827586206897, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI72000220, Length=212, Percent_Identity=29.7169811320755, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI25147242, Length=226, Percent_Identity=25.6637168141593, Blast_Score=90, Evalue=2e-18, Organism=Caenorhabditis elegans, GI25147238, Length=226, Percent_Identity=25.6637168141593, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71986574, Length=231, Percent_Identity=25.1082251082251, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI71985535, Length=190, Percent_Identity=35.2631578947368, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI71986008, Length=184, Percent_Identity=34.7826086956522, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI71986011, Length=184, Percent_Identity=34.7826086956522, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71986003, Length=184, Percent_Identity=34.7826086956522, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI32564084, Length=191, Percent_Identity=30.3664921465969, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI32564066, Length=224, Percent_Identity=28.125, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI32564088, Length=191, Percent_Identity=30.3664921465969, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI32564090, Length=191, Percent_Identity=30.3664921465969, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI32564076, Length=191, Percent_Identity=30.3664921465969, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI32564082, Length=192, Percent_Identity=31.25, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI32564080, Length=192, Percent_Identity=31.25, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI32564086, Length=191, Percent_Identity=30.3664921465969, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI193207406, Length=199, Percent_Identity=32.1608040201005, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI161084970, Length=187, Percent_Identity=34.2245989304813, Blast_Score=112, Evalue=4e-25, Organism=Drosophila melanogaster, GI17737641, Length=172, Percent_Identity=36.046511627907, Blast_Score=111, Evalue=4e-25, Organism=Drosophila melanogaster, GI24656294, Length=182, Percent_Identity=35.1648351648352, Blast_Score=110, Evalue=8e-25, Organism=Drosophila melanogaster, GI24656289, Length=182, Percent_Identity=35.1648351648352, Blast_Score=110, Evalue=9e-25, Organism=Drosophila melanogaster, GI116007764, Length=182, Percent_Identity=35.1648351648352, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI281365536, Length=182, Percent_Identity=35.1648351648352, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI24642914, Length=203, Percent_Identity=31.0344827586207, Blast_Score=100, Evalue=7e-22, Organism=Drosophila melanogaster, GI24642916, Length=203, Percent_Identity=31.0344827586207, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI45555859, Length=196, Percent_Identity=31.6326530612245, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI45549143, Length=196, Percent_Identity=31.6326530612245, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI24642910, Length=196, Percent_Identity=31.6326530612245, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI17136468, Length=183, Percent_Identity=32.2404371584699, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI28574020, Length=183, Percent_Identity=32.2404371584699, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI221330674, Length=183, Percent_Identity=32.2404371584699, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI281363097, Length=222, Percent_Identity=30.6306306306306, Blast_Score=95, Evalue=5e-20, Organism=Drosophila melanogaster, GI221330119, Length=222, Percent_Identity=30.6306306306306, Blast_Score=95, Evalue=5e-20, Organism=Drosophila melanogaster, GI221330117, Length=222, Percent_Identity=30.6306306306306, Blast_Score=95, Evalue=6e-20, Organism=Drosophila melanogaster, GI281363095, Length=222, Percent_Identity=30.6306306306306, Blast_Score=95, Evalue=6e-20, Organism=Drosophila melanogaster, GI161076829, Length=185, Percent_Identity=30.8108108108108, Blast_Score=95, Evalue=7e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018490 - InterPro: IPR018488 - InterPro: IPR000595 - InterPro: IPR005821 - InterPro: IPR003091 - InterPro: IPR014710 [H]
Pfam domain/function: PF00027 cNMP_binding; PF00520 Ion_trans [H]
EC number: NA
Molecular weight: Translated: 31598; Mature: 31598
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNKNIKHYLYITIFGTHTKGGRAFDIGLICLILASQATLILDSMASVKAEYGELLWTLE CCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YIFTAFFTLEYFLRLYCSPKPASYAKSFYGIIDVLAILPTYLALFFPSASYIAIIRLLRV HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH MRIFRVLKLVRYLQDSNILLRSLLMAKRKILIFFSTVAILVSVFGSLMFVIEGPNNGFTS HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCH IPQSIYWAIVTITTVGYGDLVPHTALGKAVASLTMLLGYSILAVPTGIITAELNQEMNAH HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH RDLVRCPNCVKGGHESDAMHCKHCGSKLPEPQERIVRPNQNR HHHHHCCHHHCCCCCCCCHHHHHHCCCCCCCHHHCCCCCCCC >Mature Secondary Structure MNNKNIKHYLYITIFGTHTKGGRAFDIGLICLILASQATLILDSMASVKAEYGELLWTLE CCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YIFTAFFTLEYFLRLYCSPKPASYAKSFYGIIDVLAILPTYLALFFPSASYIAIIRLLRV HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH MRIFRVLKLVRYLQDSNILLRSLLMAKRKILIFFSTVAILVSVFGSLMFVIEGPNNGFTS HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCH IPQSIYWAIVTITTVGYGDLVPHTALGKAVASLTMLLGYSILAVPTGIITAELNQEMNAH HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH RDLVRCPNCVKGGHESDAMHCKHCGSKLPEPQERIVRPNQNR HHHHHCCHHHCCCCCCCCHHHHHHCCCCCCCHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1522059 [H]