| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695318
Identifier: 209695318
GI number: 209695318
Start: 1986310
End: 1987194
Strand: Reverse
Name: 209695318
Synonym: VSAL_I1851
Alternate gene names: NA
Gene position: 1987194-1986310 (Counterclockwise)
Preceding gene: 209695321
Following gene: 209695316
Centisome position: 59.76
GC content: 35.93
Gene sequence:
>885_bases ATGGATCACGTTTCATCATTTATCACCAATAGGATCATCATGCTTTCAATCACTCATCGCTTTATTTTACTTGTTCTAGT AAGCCTTTCACTTACCGGATGCTTTGGGATAAAACCGACAACAGAACAATTATGCGAAGAACATGGCGCTTTACAATGTC AAGAACTCAATATGCGTGATGGACAATGCCGCCATCAAAGAGATGAATTAATTTTAAACCGTTTTGATGTACTAAAAACC AATTCGGATCTTGATAAATTAAAAACCTTACAGGCCACATTAAAATACCAAACCTGTTTAGGCTCTGCTGCACAAATTGA ACCAATCACAGCAAAAGAAATTAAATCAAAACGTACCGAAGCTTTACTTCATACGTATGATGCCTCGGATGCACTTTCGG AAGAATTAAAAAGCTCTACAGACCCTAAAGTTCTCTTTTATCGCTGGACTGTGGGCGACAAAGAGGCATTACGATCTTTT TTACAATTAGAAAATACAAAAGAATTAGAAACGGCCGAGTTACAATATGCATTAGCCACCTTTTATACTCTTCGAAATGA GAATAAAACAATTCAGTTACTTAACCATTCTTTAGAACTGCTCACAGAACAAGACTATAAAAATCAATTTCATTCGATCA TCATTAACTCACTAGCAAGTGTGAACTATAAAGCAGGCAATAAAGAGCACGCTTATATCTGGACGATGGTAGGAAAAGCA TTTGACTTACAAGTGGCCTCCGAACAGCAATTAAAGCTACTTTATCATTTTCCAGAAGAGACAAAACAAGAGTTACTGAT TACATCAGAAATGATTAAAGACAGCATTAAAGCGCAAAATTTTACCGTTTCAATGCTTCCGACAATAAATAACGACTCAC AGTAA
Upstream 100 bases:
>100_bases ATAGTTTATTAATATCCATTATTTACTCTACTCTGTTAAATATCTTAGAAAGATATCTTTTCATTAAGGTTAGTCAATCA AGTGCCGATAAATAGGTGTA
Downstream 100 bases:
>100_bases TCATTAGTGATGACAAAACAGAGAGGAATTATCGGTATCTCCTCCCTGTTATTTCTCTATTTTTTATTTACCTTTAAAGC GTAGAGAAATAGAGTTAACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 294; Mature: 294
Protein sequence:
>294_residues MDHVSSFITNRIIMLSITHRFILLVLVSLSLTGCFGIKPTTEQLCEEHGALQCQELNMRDGQCRHQRDELILNRFDVLKT NSDLDKLKTLQATLKYQTCLGSAAQIEPITAKEIKSKRTEALLHTYDASDALSEELKSSTDPKVLFYRWTVGDKEALRSF LQLENTKELETAELQYALATFYTLRNENKTIQLLNHSLELLTEQDYKNQFHSIIINSLASVNYKAGNKEHAYIWTMVGKA FDLQVASEQQLKLLYHFPEETKQELLITSEMIKDSIKAQNFTVSMLPTINNDSQ
Sequences:
>Translated_294_residues MDHVSSFITNRIIMLSITHRFILLVLVSLSLTGCFGIKPTTEQLCEEHGALQCQELNMRDGQCRHQRDELILNRFDVLKT NSDLDKLKTLQATLKYQTCLGSAAQIEPITAKEIKSKRTEALLHTYDASDALSEELKSSTDPKVLFYRWTVGDKEALRSF LQLENTKELETAELQYALATFYTLRNENKTIQLLNHSLELLTEQDYKNQFHSIIINSLASVNYKAGNKEHAYIWTMVGKA FDLQVASEQQLKLLYHFPEETKQELLITSEMIKDSIKAQNFTVSMLPTINNDSQ >Mature_294_residues MDHVSSFITNRIIMLSITHRFILLVLVSLSLTGCFGIKPTTEQLCEEHGALQCQELNMRDGQCRHQRDELILNRFDVLKT NSDLDKLKTLQATLKYQTCLGSAAQIEPITAKEIKSKRTEALLHTYDASDALSEELKSSTDPKVLFYRWTVGDKEALRSF LQLENTKELETAELQYALATFYTLRNENKTIQLLNHSLELLTEQDYKNQFHSIIINSLASVNYKAGNKEHAYIWTMVGKA FDLQVASEQQLKLLYHFPEETKQELLITSEMIKDSIKAQNFTVSMLPTINNDSQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33684; Mature: 33684
Theoretical pI: Translated: 6.05; Mature: 6.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDHVSSFITNRIIMLSITHRFILLVLVSLSLTGCFGIKPTTEQLCEEHGALQCQELNMRD CCHHHHHHHCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEECCCCC GQCRHQRDELILNRFDVLKTNSDLDKLKTLQATLKYQTCLGSAAQIEPITAKEIKSKRTE CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH ALLHTYDASDALSEELKSSTDPKVLFYRWTVGDKEALRSFLQLENTKELETAELQYALAT HHHHHCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH FYTLRNENKTIQLLNHSLELLTEQDYKNQFHSIIINSLASVNYKAGNKEHAYIWTMVGKA HHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCE FDLQVASEQQLKLLYHFPEETKQELLITSEMIKDSIKAQNFTVSMLPTINNDSQ EEEEECCHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCC >Mature Secondary Structure MDHVSSFITNRIIMLSITHRFILLVLVSLSLTGCFGIKPTTEQLCEEHGALQCQELNMRD CCHHHHHHHCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEECCCCC GQCRHQRDELILNRFDVLKTNSDLDKLKTLQATLKYQTCLGSAAQIEPITAKEIKSKRTE CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH ALLHTYDASDALSEELKSSTDPKVLFYRWTVGDKEALRSFLQLENTKELETAELQYALAT HHHHHCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH FYTLRNENKTIQLLNHSLELLTEQDYKNQFHSIIINSLASVNYKAGNKEHAYIWTMVGKA HHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCE FDLQVASEQQLKLLYHFPEETKQELLITSEMIKDSIKAQNFTVSMLPTINNDSQ EEEEECCHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA