Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695223

Identifier: 209695223

GI number: 209695223

Start: 1853551

End: 1854279

Strand: Reverse

Name: 209695223

Synonym: VSAL_I1741

Alternate gene names: NA

Gene position: 1854279-1853551 (Counterclockwise)

Preceding gene: 209695224

Following gene: 209695222

Centisome position: 55.77

GC content: 31.14

Gene sequence:

>729_bases
ATGGATAATAAAGAGCTTGAATTAAAGCTAAAAAATGATCTTTATCATACAAAGGTTATTTATCAATGGGAGTACACTGG
TTTTTATGGAAATAAAACATCATTAACTCAATGGCTGTTAGGTATATTTATTCCGTTCTTTCCAATAAGTATATTATTAT
TAATCAATAATATAAGTGCCGTGGTGCCATTTCTTTTTATAGCATTCATAATGATGTTTGTTGTTCGTTATTTATGGTTT
TCAGATTGCACCCATAAATTTTATTTAACGGGTGTGGGTATTCATTTTACAACAGAGCAGATAATTCCTGAAATGGCGTA
TAAAGTGATGAGAGGTTTTGCTTGGTTTGGTGTGGCGGTAAGTTTTTTGGCTATAACTATAATAGGGCCGATGGCTTTTG
TTGGGGCAGGAGCTTGTGCATTGTTGTCATTTAAAATGACAGGGTTTGAGTCAAAAATCAGCAAATCATATATACTTTTT
TCTGATGAATATACATTATTTGATATTAGAAAAGAGGATACTTTTGCAATTATAAGTCATCCATATGATTTATATAATTC
ATACGAAGCATTATTTTATTCTCCTAAAGATCGAGAAGAAATAAAGAAACACCTATTAAGTGTTTTCCGTAAAAGCAGAT
ACTTTGAAATCAATAATTCTAAGGAAATCGATAATTACGGTCCATTTGAACCCTCTGAGAATCTGAGCATCAATCATGCT
AACTCATAA

Upstream 100 bases:

>100_bases
CTAGGAAGTAATGAAGGAGGTATCTTAGTTAGAATATTTACTGATATAAAAATTAGGAATGAGTTCATCAGCCGACTTTT
AGTTCTTGGGGGTAATGATA

Downstream 100 bases:

>100_bases
AAACATAGATAATAACGATAAAATAGAAACCATGAGAATGGCTTTATACAACGAAGAAGTACTTTATGAGTATGAAACCA
TAGAGCATCAATATTTGGGG

Product: membrane protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MDNKELELKLKNDLYHTKVIYQWEYTGFYGNKTSLTQWLLGIFIPFFPISILLLINNISAVVPFLFIAFIMMFVVRYLWF
SDCTHKFYLTGVGIHFTTEQIIPEMAYKVMRGFAWFGVAVSFLAITIIGPMAFVGAGACALLSFKMTGFESKISKSYILF
SDEYTLFDIRKEDTFAIISHPYDLYNSYEALFYSPKDREEIKKHLLSVFRKSRYFEINNSKEIDNYGPFEPSENLSINHA
NS

Sequences:

>Translated_242_residues
MDNKELELKLKNDLYHTKVIYQWEYTGFYGNKTSLTQWLLGIFIPFFPISILLLINNISAVVPFLFIAFIMMFVVRYLWF
SDCTHKFYLTGVGIHFTTEQIIPEMAYKVMRGFAWFGVAVSFLAITIIGPMAFVGAGACALLSFKMTGFESKISKSYILF
SDEYTLFDIRKEDTFAIISHPYDLYNSYEALFYSPKDREEIKKHLLSVFRKSRYFEINNSKEIDNYGPFEPSENLSINHA
NS
>Mature_242_residues
MDNKELELKLKNDLYHTKVIYQWEYTGFYGNKTSLTQWLLGIFIPFFPISILLLINNISAVVPFLFIAFIMMFVVRYLWF
SDCTHKFYLTGVGIHFTTEQIIPEMAYKVMRGFAWFGVAVSFLAITIIGPMAFVGAGACALLSFKMTGFESKISKSYILF
SDEYTLFDIRKEDTFAIISHPYDLYNSYEALFYSPKDREEIKKHLLSVFRKSRYFEINNSKEIDNYGPFEPSENLSINHA
NS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28164; Mature: 28164

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNKELELKLKNDLYHTKVIYQWEYTGFYGNKTSLTQWLLGIFIPFFPISILLLINNISA
CCCCEEEEEECCCCEEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVPFLFIAFIMMFVVRYLWFSDCTHKFYLTGVGIHFTTEQIIPEMAYKVMRGFAWFGVAV
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
SFLAITIIGPMAFVGAGACALLSFKMTGFESKISKSYILFSDEYTLFDIRKEDTFAIISH
HHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHCCEEEEEECCEEEEEECCCCCEEEEEC
PYDLYNSYEALFYSPKDREEIKKHLLSVFRKSRYFEINNSKEIDNYGPFEPSENLSINHA
CHHHHCCCHHEEECCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCEECC
NS
CC
>Mature Secondary Structure
MDNKELELKLKNDLYHTKVIYQWEYTGFYGNKTSLTQWLLGIFIPFFPISILLLINNISA
CCCCEEEEEECCCCEEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVPFLFIAFIMMFVVRYLWFSDCTHKFYLTGVGIHFTTEQIIPEMAYKVMRGFAWFGVAV
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
SFLAITIIGPMAFVGAGACALLSFKMTGFESKISKSYILFSDEYTLFDIRKEDTFAIISH
HHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHCCEEEEEECCEEEEEECCCCCEEEEEC
PYDLYNSYEALFYSPKDREEIKKHLLSVFRKSRYFEINNSKEIDNYGPFEPSENLSINHA
CHHHHCCCHHEEECCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCEECC
NS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA