| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695146
Identifier: 209695146
GI number: 209695146
Start: 1747924
End: 1748379
Strand: Reverse
Name: 209695146
Synonym: VSAL_I1647
Alternate gene names: NA
Gene position: 1748379-1747924 (Counterclockwise)
Preceding gene: 209695147
Following gene: 209695145
Centisome position: 52.58
GC content: 34.65
Gene sequence:
>456_bases ATGATAATGAATAAGGCTATGGATTTTTTGGTGTTACAGGTTGAATATTTAGTGCATATGCTTACTAGCCGTGCAGGTTA CATAACTCTTTTCAAAGGGGGGCTTGCTTTAGCAACTCTATGTATAATATCAGTGCAACAAGTTTTCACACTTGCTATAC CAATTGAGAGTGAAGCTTATAAGCTAAAATATGAGGTTGAGTTTTCGACACAAAAACAATATGAATCATTTGATTCTATG ATTTGTAATTTACAAGACGAAACCTATGCTAAATGTAAATTGGCAATACAAAAAGAGTCTCTGATATCGAGTAGTTTTGA TGCACTATATAGTTGGCTTGAGCTCTTTTCTGTTTTGGCTGCCCTAATGATCTTCTTTTCTATTCTTGGCTTTTTAGCCA ACCCTCACTTTCATAAGGTCACCAGAAATGAGCCTTTCGAAAATCAAGAAACATAA
Upstream 100 bases:
>100_bases TTTAGCGTTTACGGCACAATACTTTAGATTTGGGTGGAGGCGTTGTTCACCCCTTAATTGGGCGTTATGTTTCAGGCGGT ATCCAGTATTTACTAAGGAC
Downstream 100 bases:
>100_bases CAAAGCGTTTAAGACGGATTCCCAACGCTCGGCATTTTCGGTTTAATTCAGGTTTAGTGTTTACGGCACAATGGTTTAGG TGCGGTGGTCTGCGTTGCTC
Product: membrane protein, phage gene
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 151; Mature: 151
Protein sequence:
>151_residues MIMNKAMDFLVLQVEYLVHMLTSRAGYITLFKGGLALATLCIISVQQVFTLAIPIESEAYKLKYEVEFSTQKQYESFDSM ICNLQDETYAKCKLAIQKESLISSSFDALYSWLELFSVLAALMIFFSILGFLANPHFHKVTRNEPFENQET
Sequences:
>Translated_151_residues MIMNKAMDFLVLQVEYLVHMLTSRAGYITLFKGGLALATLCIISVQQVFTLAIPIESEAYKLKYEVEFSTQKQYESFDSM ICNLQDETYAKCKLAIQKESLISSSFDALYSWLELFSVLAALMIFFSILGFLANPHFHKVTRNEPFENQET >Mature_151_residues MIMNKAMDFLVLQVEYLVHMLTSRAGYITLFKGGLALATLCIISVQQVFTLAIPIESEAYKLKYEVEFSTQKQYESFDSM ICNLQDETYAKCKLAIQKESLISSSFDALYSWLELFSVLAALMIFFSILGFLANPHFHKVTRNEPFENQET
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17306; Mature: 17306
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIMNKAMDFLVLQVEYLVHMLTSRAGYITLFKGGLALATLCIISVQQVFTLAIPIESEAY CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCE KLKYEVEFSTQKQYESFDSMICNLQDETYAKCKLAIQKESLISSSFDALYSWLELFSVLA EEEEEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALMIFFSILGFLANPHFHKVTRNEPFENQET HHHHHHHHHHHHCCCCHHCCCCCCCCCCCCC >Mature Secondary Structure MIMNKAMDFLVLQVEYLVHMLTSRAGYITLFKGGLALATLCIISVQQVFTLAIPIESEAY CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCE KLKYEVEFSTQKQYESFDSMICNLQDETYAKCKLAIQKESLISSSFDALYSWLELFSVLA EEEEEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALMIFFSILGFLANPHFHKVTRNEPFENQET HHHHHHHHHHHHCCCCHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA