| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694983
Identifier: 209694983
GI number: 209694983
Start: 1586175
End: 1586423
Strand: Reverse
Name: 209694983
Synonym: VSAL_I1470
Alternate gene names: NA
Gene position: 1586423-1586175 (Counterclockwise)
Preceding gene: 209694994
Following gene: 209694982
Centisome position: 47.71
GC content: 40.16
Gene sequence:
>249_bases ATGACCACTAGAATTTTAGCCGATGTTGCAGCAAGCATTACCGAGTTTAAAGCTAACCCAATGAAAGTTGCTTCAAGTGC TTACGGTGAAGCTGTTGCGATACTAAACAGGAATGAGCCTGCATTTTATTGTGTGCCAGCAGAAGCTTATGAACTATTGC TGGATAGAGTTGAAGATCTAGAACTATTATCCCTTGCCGCAGAACGAGAGAATGAAGAAACTATTTCGGTAAACATCCAT GACTTATAA
Upstream 100 bases:
>100_bases GAAACCTTGAATGCCGAATCTAGTAAATCATGTTGATTGCTTTGTTAAACCGCAATGACACGCTATAATGACCGAATAAT CAACCTAATTAGAGACCGTT
Downstream 100 bases:
>100_bases GTTAGACTTCAAAAAGAGCGCATATAAAGAATGGAATAAACTCGGTGCAACACTTCGTGAGCAATTTAAGAAAAAGCTAT TAGAACGCTTAGATAATCCT
Product: hypothetical protein
Products: NA
Alternate protein names: Antitoxin Of xin-Antitoxin Stability System; Stability Protein StbD
Number of amino acids: Translated: 82; Mature: 81
Protein sequence:
>82_residues MTTRILADVAASITEFKANPMKVASSAYGEAVAILNRNEPAFYCVPAEAYELLLDRVEDLELLSLAAERENEETISVNIH DL
Sequences:
>Translated_82_residues MTTRILADVAASITEFKANPMKVASSAYGEAVAILNRNEPAFYCVPAEAYELLLDRVEDLELLSLAAERENEETISVNIH DL >Mature_81_residues TTRILADVAASITEFKANPMKVASSAYGEAVAILNRNEPAFYCVPAEAYELLLDRVEDLELLSLAAERENEETISVNIHD L
Specific function: Unknown
COG id: COG2161
COG function: function code D; Antitoxin of toxin-antitoxin stability system
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9041; Mature: 8910
Theoretical pI: Translated: 4.02; Mature: 4.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTRILADVAASITEFKANPMKVASSAYGEAVAILNRNEPAFYCVPAEAYELLLDRVEDL CCHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEECCCCEEEEECHHHHHHHHHHHCCH ELLSLAAERENEETISVNIHDL HHHHHHHCCCCCCEEEEEEECC >Mature Secondary Structure TTRILADVAASITEFKANPMKVASSAYGEAVAILNRNEPAFYCVPAEAYELLLDRVEDL CHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEECCCCEEEEECHHHHHHHHHHHCCH ELLSLAAERENEETISVNIHDL HHHHHHHCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA