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The map label for this gene is hlyB [H]

Identifier: 209694828

GI number: 209694828

Start: 1403518

End: 1405509

Strand: Reverse

Name: hlyB [H]

Synonym: VSAL_I1294

Alternate gene names: 209694828

Gene position: 1405509-1403518 (Counterclockwise)

Preceding gene: 209694836

Following gene: 209694822

Centisome position: 42.27

GC content: 40.46

Gene sequence:

>1992_bases
ATGAATAGTTCGGTTGTACGTCGCATGTATGCAGGTTTTTCACTCATTGTTATCCTGTTTATTACGACAGTCATTATAAT
GCTCAATGGAACGAGCAACATCCACAAACAAATGCAATCGGTCTCAACAGAGTCCATGCCCCTTGTCAGTTTATCAAACG
AAACAAGTGTTGCCTTACTTGCCGCCGACAAATCCTTTAAAGATTTCCTAACCACTCGTGATCCGGTTCAGATGCAACAA
GCTCGTCAGCAATTCTCTGTTGCAGAAACAACATTTAAAAATACCTTTCAGCGCTTAACCGCCGCCGCACAGAGAAACAG
TACCACCGCACAACAAAGCGCAGAGTTAGCGTCAATCGAAAGCCAATATTTCACCGAAGCGCTCGTCGCAATGGACAACT
ACCAAGATTTATTAGTCGCAGAAGACAGCAAACAAAAAGCAACCCGTAACTTTCAACGTTTGTATACTGAGCTTAGTGTA
CGAATGAAAGAATACATTGACGGTCAAGAAAGCATTGCCGTAAAAATGATGGCAAAAAGCTACTTTGTAAAACTAGAAGA
TGCAGAGTTAATCACATCAGATGCACTAGCAAGTAATGACGTTGAGTTCGTTAAAAAAGCCGTCAATAAAAACAAGAAAG
CCGTGACTCATTTAAACTACGCTTACCGTGGGTTAAACAATCAACTGCCAGAATTAAAACCTATTTTTGATGATTCAGTG
AATAAATTCAGTCTTGAAGTCGGTAAAAAAGAAGGCATTCTTAATACGCATTTCATTTACTTAAACGCCAAAGAAACCTT
ATACACCAACATCTCAAATTTAGCTCATCAAATTGATGCAGGGCTAACGCTTCTTAACTCATTCAATAAATCAGCCAATC
AAGGTTTACAGAATTCACTAGAACAGGCTGACGTCATTTATCAACAGAGTTTTTATAAAGCGGTTGTTCTCGGTGTGGTT
GTCTCGCTACTTGCAACAGCTATTGGTTTTCATCTTGCCTCATCAGTACGAACGCCACTCAATAATATGCTGCGTATTTT
AGAATCATTAACCTCTGGGGATATGACACAACGAATTGCAACAAAGCATAACTCTGAATTTAGTCGTGTATCTCGCCATA
TTAATACGTTAGCGGATAATTTGCAGAAAGTCTTATTACAGCTAAGTGCGGCTTCTGATGAACTTACGACGGTTGCACAA
AATAACAGTTCTACCGCAGAAAAGGCCAAACAGCAGCTACTAGAACAACGCGAAAAAACCACCAGTGTTGCGGCCGCAAT
GACAGAAATGGAACACTCTGTCGTTGAAGTTGCATCAAGCTCAGAAAGCTCCCTGCTTAAAGTACAAGAAGTTGAAGCGG
CATCAGAGCACGGCCAACAAGTGATGACAAATAACATTGCAACGATAGAGCAATTATCAAGTCGCTTAGATGAATCTGTA
CATGCCGTTGCAAACTTACAAAAAGTCAGCAGTGAAATTGGTTCGATTCTCGATGTGATCAATAAAATTGCAGCACAAAC
TAACTTACTCGCTTTAAATGCCGCCATTGAAGCCGCTCGTGCTGGAGAGCAAGGTCGTGGATTTGCCGTTGTTGCCGATG
AAGTTCGAGTGTTAGCAAAACGCACTGCAGAATCAACCTCTGAAATTGAAACGATGATTGGTAACCTTCAATCCAGTTCA
AAAACCACCACTCTCGTCATTGAAAGTTGTGTCGAAGATATGCAACAAAGCGTAACTCAAACTAATGAAGCCAATAATGC
CATGGTGATGATTCAAAACTTAATTGAAGAAATAAGTCACATGAGTAACCATATTTCTCAAGCAGCAAATGAGCAGAGTG
CCACAACCACTGAAATTGCACGCAGTTTGGAAGACATTAGTCACATTGCAGAAGAGAATCAAACCGCAATGAATGATATT
GCCAATGTCAGTTCAACGCTGAATGAGTTAGCCCATCAGCAAAGTGATATTGTGCATCAATTTAAAGTGTAA

Upstream 100 bases:

>100_bases
AATAATCATAATATGAATAATTGTTGTCATAATTTTAAGACTTTTCTTATTTACTTTCTAAATTCTAAGTCTTGCATTAC
TTTTAAAGAGAGAAGAGAAC

Downstream 100 bases:

>100_bases
ATTGAAAGGTAATTCCGTTATTCAATATGAAATAGCATAAAAATATAAGCCAATACCTACAGAAGTTTTAATTACTGTCC
TACTCTTTAAACATATAGTT

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 663; Mature: 663

Protein sequence:

>663_residues
MNSSVVRRMYAGFSLIVILFITTVIIMLNGTSNIHKQMQSVSTESMPLVSLSNETSVALLAADKSFKDFLTTRDPVQMQQ
ARQQFSVAETTFKNTFQRLTAAAQRNSTTAQQSAELASIESQYFTEALVAMDNYQDLLVAEDSKQKATRNFQRLYTELSV
RMKEYIDGQESIAVKMMAKSYFVKLEDAELITSDALASNDVEFVKKAVNKNKKAVTHLNYAYRGLNNQLPELKPIFDDSV
NKFSLEVGKKEGILNTHFIYLNAKETLYTNISNLAHQIDAGLTLLNSFNKSANQGLQNSLEQADVIYQQSFYKAVVLGVV
VSLLATAIGFHLASSVRTPLNNMLRILESLTSGDMTQRIATKHNSEFSRVSRHINTLADNLQKVLLQLSAASDELTTVAQ
NNSSTAEKAKQQLLEQREKTTSVAAAMTEMEHSVVEVASSSESSLLKVQEVEAASEHGQQVMTNNIATIEQLSSRLDESV
HAVANLQKVSSEIGSILDVINKIAAQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLAKRTAESTSEIETMIGNLQSSS
KTTTLVIESCVEDMQQSVTQTNEANNAMVMIQNLIEEISHMSNHISQAANEQSATTTEIARSLEDISHIAEENQTAMNDI
ANVSSTLNELAHQQSDIVHQFKV

Sequences:

>Translated_663_residues
MNSSVVRRMYAGFSLIVILFITTVIIMLNGTSNIHKQMQSVSTESMPLVSLSNETSVALLAADKSFKDFLTTRDPVQMQQ
ARQQFSVAETTFKNTFQRLTAAAQRNSTTAQQSAELASIESQYFTEALVAMDNYQDLLVAEDSKQKATRNFQRLYTELSV
RMKEYIDGQESIAVKMMAKSYFVKLEDAELITSDALASNDVEFVKKAVNKNKKAVTHLNYAYRGLNNQLPELKPIFDDSV
NKFSLEVGKKEGILNTHFIYLNAKETLYTNISNLAHQIDAGLTLLNSFNKSANQGLQNSLEQADVIYQQSFYKAVVLGVV
VSLLATAIGFHLASSVRTPLNNMLRILESLTSGDMTQRIATKHNSEFSRVSRHINTLADNLQKVLLQLSAASDELTTVAQ
NNSSTAEKAKQQLLEQREKTTSVAAAMTEMEHSVVEVASSSESSLLKVQEVEAASEHGQQVMTNNIATIEQLSSRLDESV
HAVANLQKVSSEIGSILDVINKIAAQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLAKRTAESTSEIETMIGNLQSSS
KTTTLVIESCVEDMQQSVTQTNEANNAMVMIQNLIEEISHMSNHISQAANEQSATTTEIARSLEDISHIAEENQTAMNDI
ANVSSTLNELAHQQSDIVHQFKV
>Mature_663_residues
MNSSVVRRMYAGFSLIVILFITTVIIMLNGTSNIHKQMQSVSTESMPLVSLSNETSVALLAADKSFKDFLTTRDPVQMQQ
ARQQFSVAETTFKNTFQRLTAAAQRNSTTAQQSAELASIESQYFTEALVAMDNYQDLLVAEDSKQKATRNFQRLYTELSV
RMKEYIDGQESIAVKMMAKSYFVKLEDAELITSDALASNDVEFVKKAVNKNKKAVTHLNYAYRGLNNQLPELKPIFDDSV
NKFSLEVGKKEGILNTHFIYLNAKETLYTNISNLAHQIDAGLTLLNSFNKSANQGLQNSLEQADVIYQQSFYKAVVLGVV
VSLLATAIGFHLASSVRTPLNNMLRILESLTSGDMTQRIATKHNSEFSRVSRHINTLADNLQKVLLQLSAASDELTTVAQ
NNSSTAEKAKQQLLEQREKTTSVAAAMTEMEHSVVEVASSSESSLLKVQEVEAASEHGQQVMTNNIATIEQLSSRLDESV
HAVANLQKVSSEIGSILDVINKIAAQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLAKRTAESTSEIETMIGNLQSSS
KTTTLVIESCVEDMQQSVTQTNEANNAMVMIQNLIEEISHMSNHISQAANEQSATTTEIARSLEDISHIAEENQTAMNDI
ANVSSTLNELAHQQSDIVHQFKV

Specific function: May form a pore through which the hemolysin can be exported [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=356, Percent_Identity=28.0898876404494, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI2367378, Length=377, Percent_Identity=25.7294429708223, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1788195, Length=389, Percent_Identity=26.2210796915167, Blast_Score=115, Evalue=9e-27,
Organism=Escherichia coli, GI1788194, Length=301, Percent_Identity=28.5714285714286, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI1789453, Length=264, Percent_Identity=30.3030303030303, Blast_Score=97, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR000727 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 72912; Mature: 72912

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSSVVRRMYAGFSLIVILFITTVIIMLNGTSNIHKQMQSVSTESMPLVSLSNETSVALL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEECCCCCEEEE
AADKSFKDFLTTRDPVQMQQARQQFSVAETTFKNTFQRLTAAAQRNSTTAQQSAELASIE
ECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
SQYFTEALVAMDNYQDLLVAEDSKQKATRNFQRLYTELSVRMKEYIDGQESIAVKMMAKS
HHHHHHHHHHHCCCCHHEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
YFVKLEDAELITSDALASNDVEFVKKAVNKNKKAVTHLNYAYRGLNNQLPELKPIFDDSV
HHEEECCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCC
NKFSLEVGKKEGILNTHFIYLNAKETLYTNISNLAHQIDAGLTLLNSFNKSANQGLQNSL
CHHHHHHCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
EQADVIYQQSFYKAVVLGVVVSLLATAIGFHLASSVRTPLNNMLRILESLTSGDMTQRIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHH
TKHNSEFSRVSRHINTLADNLQKVLLQLSAASDELTTVAQNNSSTAEKAKQQLLEQREKT
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHH
TSVAAAMTEMEHSVVEVASSSESSLLKVQEVEAASEHGQQVMTNNIATIEQLSSRLDESV
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
HAVANLQKVSSEIGSILDVINKIAAQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHH
RTAESTSEIETMIGNLQSSSKTTTLVIESCVEDMQQSVTQTNEANNAMVMIQNLIEEISH
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
MSNHISQAANEQSATTTEIARSLEDISHIAEENQTAMNDIANVSSTLNELAHQQSDIVHQ
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FKV
HCC
>Mature Secondary Structure
MNSSVVRRMYAGFSLIVILFITTVIIMLNGTSNIHKQMQSVSTESMPLVSLSNETSVALL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEECCCCCEEEE
AADKSFKDFLTTRDPVQMQQARQQFSVAETTFKNTFQRLTAAAQRNSTTAQQSAELASIE
ECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
SQYFTEALVAMDNYQDLLVAEDSKQKATRNFQRLYTELSVRMKEYIDGQESIAVKMMAKS
HHHHHHHHHHHCCCCHHEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
YFVKLEDAELITSDALASNDVEFVKKAVNKNKKAVTHLNYAYRGLNNQLPELKPIFDDSV
HHEEECCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCC
NKFSLEVGKKEGILNTHFIYLNAKETLYTNISNLAHQIDAGLTLLNSFNKSANQGLQNSL
CHHHHHHCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
EQADVIYQQSFYKAVVLGVVVSLLATAIGFHLASSVRTPLNNMLRILESLTSGDMTQRIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHH
TKHNSEFSRVSRHINTLADNLQKVLLQLSAASDELTTVAQNNSSTAEKAKQQLLEQREKT
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHH
TSVAAAMTEMEHSVVEVASSSESSLLKVQEVEAASEHGQQVMTNNIATIEQLSSRLDESV
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
HAVANLQKVSSEIGSILDVINKIAAQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHH
RTAESTSEIETMIGNLQSSSKTTTLVIESCVEDMQQSVTQTNEANNAMVMIQNLIEEISH
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
MSNHISQAANEQSATTTEIARSLEDISHIAEENQTAMNDIANVSSTLNELAHQQSDIVHQ
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FKV
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2162464; 10952301 [H]