Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

Click here to switch to the map view.

The map label for this gene is 209694836

Identifier: 209694836

GI number: 209694836

Start: 1413903

End: 1414646

Strand: Reverse

Name: 209694836

Synonym: VSAL_I1302

Alternate gene names: NA

Gene position: 1414646-1413903 (Counterclockwise)

Preceding gene: 209694837

Following gene: 209694828

Centisome position: 42.54

GC content: 38.58

Gene sequence:

>744_bases
ATGTCCTCTAACGCTTTATATACTGATCTGTCTGGTTACTACGATTTAATGTGTGCAGACATCGATTATCATGAGCAAAG
TAATTATGTACGCCGAATTCATCAGATTTTCGGTAATCAAGGAAGAAACTACCTTGATTTAGCTTGTGGGACAGGACCAC
ACGTTAAACACTTTATTAACTATGGTTATCAAGCAAAAGGCTTAGACATTAATCAACCGATGCTTGATCTTGCAAAGCTG
CGTAACCCTGATGCTGAATTTATTTTGCATGACATGAGTAACTTTACTGTTGATAAACCTTTAGACTTAATCACCTGTTT
TCTTTATTCAATTCATTACAATGCAAATATTGAAAAGTTAGCAGAATGCATTGAAAGTGTTCATGCGGCATTAAAAACAG
ATGGCGTATTCTGCTTTAACTCGGTAGCAAGAAATAAGATTGATAATCGCTCATTTGTAAAGCACCCAGCAGAACATGAA
GGCAGCCAGTTTACGTTTCAATCAGGTTGGAATTACAGTGGCCAAGGGGATGGGCAGCATTTATTGTTGAAGATCGAGAA
AACAACAGATGGCGTAACCGAAATTTGGGATGATAAACACCCAATGGTCGCCGTAGATTTTGAACAACTGCAAGCGCTGT
TAGAACCGTACTTTGAGGTTCACTTGTTTGAGCATGATTACGAAAAGATAACGCCTCTTGAGACATCGTCAGGCAATTCC
ATTGTCGTCTGTATCAAAAAGTAG

Upstream 100 bases:

>100_bases
CTTACAAAGTTACTTATCTAACGCACTTCTTTTATACCTCTCAAAATAAGCAGTTAATTAAACACTTAAAAGAGATTGGT
ATTGTTATGGATAAGTACAA

Downstream 100 bases:

>100_bases
CAACGCAATAACTATATTTAGAACATAAAAAATCCGCCTATCTAAGGCGGATTTTTATTAAACCTAAATACAGAAATAAA
GGCTTATAAGTAGTTTGTAT

Product: hypothetical protein

Products: NA

Alternate protein names: Methyltransferase; SAM-Dependent Methyltransferase; S-Adenosylmethionine-Dependent Methyltransferase; N N-Dimethyltransferase; Siderophore Biosynthesis Protein; Methyltransferase Domain Family

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MSSNALYTDLSGYYDLMCADIDYHEQSNYVRRIHQIFGNQGRNYLDLACGTGPHVKHFINYGYQAKGLDINQPMLDLAKL
RNPDAEFILHDMSNFTVDKPLDLITCFLYSIHYNANIEKLAECIESVHAALKTDGVFCFNSVARNKIDNRSFVKHPAEHE
GSQFTFQSGWNYSGQGDGQHLLLKIEKTTDGVTEIWDDKHPMVAVDFEQLQALLEPYFEVHLFEHDYEKITPLETSSGNS
IVVCIKK

Sequences:

>Translated_247_residues
MSSNALYTDLSGYYDLMCADIDYHEQSNYVRRIHQIFGNQGRNYLDLACGTGPHVKHFINYGYQAKGLDINQPMLDLAKL
RNPDAEFILHDMSNFTVDKPLDLITCFLYSIHYNANIEKLAECIESVHAALKTDGVFCFNSVARNKIDNRSFVKHPAEHE
GSQFTFQSGWNYSGQGDGQHLLLKIEKTTDGVTEIWDDKHPMVAVDFEQLQALLEPYFEVHLFEHDYEKITPLETSSGNS
IVVCIKK
>Mature_246_residues
SSNALYTDLSGYYDLMCADIDYHEQSNYVRRIHQIFGNQGRNYLDLACGTGPHVKHFINYGYQAKGLDINQPMLDLAKLR
NPDAEFILHDMSNFTVDKPLDLITCFLYSIHYNANIEKLAECIESVHAALKTDGVFCFNSVARNKIDNRSFVKHPAEHEG
SQFTFQSGWNYSGQGDGQHLLLKIEKTTDGVTEIWDDKHPMVAVDFEQLQALLEPYFEVHLFEHDYEKITPLETSSGNSI
VVCIKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28207; Mature: 28076

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNALYTDLSGYYDLMCADIDYHEQSNYVRRIHQIFGNQGRNYLDLACGTGPHVKHFIN
CCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHH
YGYQAKGLDINQPMLDLAKLRNPDAEFILHDMSNFTVDKPLDLITCFLYSIHYNANIEKL
CCCEECCCCCCCHHHHHHHHCCCCHHEEEEHHCCCCCCCHHHHHHHHHHHHCCCCCHHHH
AECIESVHAALKTDGVFCFNSVARNKIDNRSFVKHPAEHEGSQFTFQSGWNYSGQGDGQH
HHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCCCE
LLLKIEKTTDGVTEIWDDKHPMVAVDFEQLQALLEPYFEVHLFEHDYEKITPLETSSGNS
EEEEEECCCCCHHHHHCCCCCEEEECHHHHHHHHHHHHHEEEEECCHHHCCCCCCCCCCE
IVVCIKK
EEEEEEC
>Mature Secondary Structure 
SSNALYTDLSGYYDLMCADIDYHEQSNYVRRIHQIFGNQGRNYLDLACGTGPHVKHFIN
CCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHH
YGYQAKGLDINQPMLDLAKLRNPDAEFILHDMSNFTVDKPLDLITCFLYSIHYNANIEKL
CCCEECCCCCCCHHHHHHHHCCCCHHEEEEHHCCCCCCCHHHHHHHHHHHHCCCCCHHHH
AECIESVHAALKTDGVFCFNSVARNKIDNRSFVKHPAEHEGSQFTFQSGWNYSGQGDGQH
HHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCCCE
LLLKIEKTTDGVTEIWDDKHPMVAVDFEQLQALLEPYFEVHLFEHDYEKITPLETSSGNS
EEEEEECCCCCHHHHHCCCCCEEEECHHHHHHHHHHHHHEEEEECCHHHCCCCCCCCCCE
IVVCIKK
EEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA