| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is ybeZ [H]
Identifier: 209694558
GI number: 209694558
Start: 1098896
End: 1099966
Strand: Reverse
Name: ybeZ [H]
Synonym: VSAL_I0995
Alternate gene names: 209694558
Gene position: 1099966-1098896 (Counterclockwise)
Preceding gene: 209694559
Following gene: 209694557
Centisome position: 33.08
GC content: 40.52
Gene sequence:
>1071_bases TTGAGCATTAAAACAACCAAATTAGAGTTGACCTTAGAGCCAGCTAATAATAAGCGTTTATCTAATCTTTGTGGTCCATT TGACGACAATATAAAACACCTTGAGCGTCGGCTTGGTGTTGAAGTAAATTATCGAGGAAATCTCTTTACCGTTGTCGGTC AACCTCATACGGTTTCCGCTGCTGTTGATATTTTAAGGGATCTTTACGTTAATACTGCGCCAATTAAAAATCAATATCCC GATATTGAACCTGAGCAAATCCATTTGGCTGTAAAAGAATCTGGCGTATTAGAACAACCCTCTGAAGCGGTAACAACGCT ACCTTATGGTAAAGAGATATTCATAAAGACAAAGAAAGGGCTAATTAAACCACGAACAGAAAACCAAGCACAGTATGTAA CTAATATCGTGACTCATGATATTACGTTTGGCATTGGTCCTGCCGGCACTGGTAAAACCTATTTAGCGGTTGCTGCGGCT GTCGATGCACTTGAACGTCAAGAAGTTCGCCGTATTTTACTGACTCGCCCAGCGGTAGAGGCCGGTGAAAAACTCGGTTT CTTACCCGGCGATCTAAGTCAAAAGGTCGATCCTTATTTACGTCCTCTCTATGATGCTCTTTTTGAAATGCTTGGGTTTG AGCGAGTGGAAAAGCTTATAGAACGTAATGTGATTGAAGTAGCACCACTGGCTTACATGCGTGGTCGTACCCTAAATGAT GCCTTTATTATTTTAGATGAAAGCCAAAATACCACAGTAGAACAAATGAAAATGTTCTTAACGCGTATTGGCTTTAACTC CCGAGCCGTTATTACTGGGGATGTTACTCAGATAGATTTACCTCGCGGTGCGAAATCTGGTTTACGTCATGCAGTTGAAG TATTATCAGAAGTTGATGAAATTAGTTTTAATTTCTTTATCGCAGATGATGTAGTTCGCCACCCTGTTGTTGCTCGTATC GTAAATGCCTATGAAAAATGGGAAACAAATGATCAAAAAGAGCGTAAACTAGGAGAACAGCGTCGAAAAGAAGAACGTGA TGCACGTTTACTCGATTCTGAAAACAACTAG
Upstream 100 bases:
>100_bases GCTTACTTGATCATCTTTTTTCTTATTTAACCTTGAGAAAACCCCCTTTTTCCCCAATAAATAATAGATAAACCCATAGC CAATATTATGCGAGGCAGCA
Downstream 100 bases:
>100_bases TACAATAATTTCAGGTGAACCATGAGCATTGAACTCGATCTACAAATTGCATGTGAAAATGAAAAAGACTTGCCTTCAGA AAAAGATTTTATGTCTTGGT
Product: PhoH-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 356; Mature: 355
Protein sequence:
>356_residues MSIKTTKLELTLEPANNKRLSNLCGPFDDNIKHLERRLGVEVNYRGNLFTVVGQPHTVSAAVDILRDLYVNTAPIKNQYP DIEPEQIHLAVKESGVLEQPSEAVTTLPYGKEIFIKTKKGLIKPRTENQAQYVTNIVTHDITFGIGPAGTGKTYLAVAAA VDALERQEVRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFERVEKLIERNVIEVAPLAYMRGRTLND AFIILDESQNTTVEQMKMFLTRIGFNSRAVITGDVTQIDLPRGAKSGLRHAVEVLSEVDEISFNFFIADDVVRHPVVARI VNAYEKWETNDQKERKLGEQRRKEERDARLLDSENN
Sequences:
>Translated_356_residues MSIKTTKLELTLEPANNKRLSNLCGPFDDNIKHLERRLGVEVNYRGNLFTVVGQPHTVSAAVDILRDLYVNTAPIKNQYP DIEPEQIHLAVKESGVLEQPSEAVTTLPYGKEIFIKTKKGLIKPRTENQAQYVTNIVTHDITFGIGPAGTGKTYLAVAAA VDALERQEVRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFERVEKLIERNVIEVAPLAYMRGRTLND AFIILDESQNTTVEQMKMFLTRIGFNSRAVITGDVTQIDLPRGAKSGLRHAVEVLSEVDEISFNFFIADDVVRHPVVARI VNAYEKWETNDQKERKLGEQRRKEERDARLLDSENN >Mature_355_residues SIKTTKLELTLEPANNKRLSNLCGPFDDNIKHLERRLGVEVNYRGNLFTVVGQPHTVSAAVDILRDLYVNTAPIKNQYPD IEPEQIHLAVKESGVLEQPSEAVTTLPYGKEIFIKTKKGLIKPRTENQAQYVTNIVTHDITFGIGPAGTGKTYLAVAAAV DALERQEVRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFERVEKLIERNVIEVAPLAYMRGRTLNDA FIILDESQNTTVEQMKMFLTRIGFNSRAVITGDVTQIDLPRGAKSGLRHAVEVLSEVDEISFNFFIADDVVRHPVVARIV NAYEKWETNDQKERKLGEQRRKEERDARLLDSENN
Specific function: Unknown
COG id: COG1702
COG function: function code T; Phosphate starvation-inducible protein PhoH, predicted ATPase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phoH family [H]
Homologues:
Organism=Escherichia coli, GI145693103, Length=350, Percent_Identity=76.5714285714286, Blast_Score=529, Evalue=1e-151, Organism=Escherichia coli, GI1787257, Length=205, Percent_Identity=45.3658536585366, Blast_Score=189, Evalue=2e-49,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003714 [H]
Pfam domain/function: PF02562 PhoH [H]
EC number: NA
Molecular weight: Translated: 40168; Mature: 40037
Theoretical pI: Translated: 6.03; Mature: 6.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIKTTKLELTLEPANNKRLSNLCGPFDDNIKHLERRLGVEVNYRGNLFTVVGQPHTVSA CCCEEEEEEEEECCCCCCHHHHHCCCCCHHHHHHHHHHCEEEEECCCEEEEECCCCHHHH AVDILRDLYVNTAPIKNQYPDIEPEQIHLAVKESGVLEQPSEAVTTLPYGKEIFIKTKKG HHHHHHHHHCCCCCCCCCCCCCCHHHEEEEEECCCCCCCCCHHHEECCCCCEEEEEECCC LIKPRTENQAQYVTNIVTHDITFGIGPAGTGKTYLAVAAAVDALERQEVRRILLTRPAVE CCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH AGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFERVEKLIERNVIEVAPLAYMRGRTLND HHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHCCCCCCC AFIILDESQNTTVEQMKMFLTRIGFNSRAVITGDVTQIDLPRGAKSGLRHAVEVLSEVDE EEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCHHHHHHHHHHHHHHHHH ISFNFFIADDVVRHPVVARIVNAYEKWETNDQKERKLGEQRRKEERDARLLDSENN HCEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SIKTTKLELTLEPANNKRLSNLCGPFDDNIKHLERRLGVEVNYRGNLFTVVGQPHTVSA CCEEEEEEEEECCCCCCHHHHHCCCCCHHHHHHHHHHCEEEEECCCEEEEECCCCHHHH AVDILRDLYVNTAPIKNQYPDIEPEQIHLAVKESGVLEQPSEAVTTLPYGKEIFIKTKKG HHHHHHHHHCCCCCCCCCCCCCCHHHEEEEEECCCCCCCCCHHHEECCCCCEEEEEECCC LIKPRTENQAQYVTNIVTHDITFGIGPAGTGKTYLAVAAAVDALERQEVRRILLTRPAVE CCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH AGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFERVEKLIERNVIEVAPLAYMRGRTLND HHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHCCCCCCC AFIILDESQNTTVEQMKMFLTRIGFNSRAVITGDVTQIDLPRGAKSGLRHAVEVLSEVDE EEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCHHHHHHHHHHHHHHHHH ISFNFFIADDVVRHPVVARIVNAYEKWETNDQKERKLGEQRRKEERDARLLDSENN HCEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]