Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is ybeZ [H]

Identifier: 209694558

GI number: 209694558

Start: 1098896

End: 1099966

Strand: Reverse

Name: ybeZ [H]

Synonym: VSAL_I0995

Alternate gene names: 209694558

Gene position: 1099966-1098896 (Counterclockwise)

Preceding gene: 209694559

Following gene: 209694557

Centisome position: 33.08

GC content: 40.52

Gene sequence:

>1071_bases
TTGAGCATTAAAACAACCAAATTAGAGTTGACCTTAGAGCCAGCTAATAATAAGCGTTTATCTAATCTTTGTGGTCCATT
TGACGACAATATAAAACACCTTGAGCGTCGGCTTGGTGTTGAAGTAAATTATCGAGGAAATCTCTTTACCGTTGTCGGTC
AACCTCATACGGTTTCCGCTGCTGTTGATATTTTAAGGGATCTTTACGTTAATACTGCGCCAATTAAAAATCAATATCCC
GATATTGAACCTGAGCAAATCCATTTGGCTGTAAAAGAATCTGGCGTATTAGAACAACCCTCTGAAGCGGTAACAACGCT
ACCTTATGGTAAAGAGATATTCATAAAGACAAAGAAAGGGCTAATTAAACCACGAACAGAAAACCAAGCACAGTATGTAA
CTAATATCGTGACTCATGATATTACGTTTGGCATTGGTCCTGCCGGCACTGGTAAAACCTATTTAGCGGTTGCTGCGGCT
GTCGATGCACTTGAACGTCAAGAAGTTCGCCGTATTTTACTGACTCGCCCAGCGGTAGAGGCCGGTGAAAAACTCGGTTT
CTTACCCGGCGATCTAAGTCAAAAGGTCGATCCTTATTTACGTCCTCTCTATGATGCTCTTTTTGAAATGCTTGGGTTTG
AGCGAGTGGAAAAGCTTATAGAACGTAATGTGATTGAAGTAGCACCACTGGCTTACATGCGTGGTCGTACCCTAAATGAT
GCCTTTATTATTTTAGATGAAAGCCAAAATACCACAGTAGAACAAATGAAAATGTTCTTAACGCGTATTGGCTTTAACTC
CCGAGCCGTTATTACTGGGGATGTTACTCAGATAGATTTACCTCGCGGTGCGAAATCTGGTTTACGTCATGCAGTTGAAG
TATTATCAGAAGTTGATGAAATTAGTTTTAATTTCTTTATCGCAGATGATGTAGTTCGCCACCCTGTTGTTGCTCGTATC
GTAAATGCCTATGAAAAATGGGAAACAAATGATCAAAAAGAGCGTAAACTAGGAGAACAGCGTCGAAAAGAAGAACGTGA
TGCACGTTTACTCGATTCTGAAAACAACTAG

Upstream 100 bases:

>100_bases
GCTTACTTGATCATCTTTTTTCTTATTTAACCTTGAGAAAACCCCCTTTTTCCCCAATAAATAATAGATAAACCCATAGC
CAATATTATGCGAGGCAGCA

Downstream 100 bases:

>100_bases
TACAATAATTTCAGGTGAACCATGAGCATTGAACTCGATCTACAAATTGCATGTGAAAATGAAAAAGACTTGCCTTCAGA
AAAAGATTTTATGTCTTGGT

Product: PhoH-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MSIKTTKLELTLEPANNKRLSNLCGPFDDNIKHLERRLGVEVNYRGNLFTVVGQPHTVSAAVDILRDLYVNTAPIKNQYP
DIEPEQIHLAVKESGVLEQPSEAVTTLPYGKEIFIKTKKGLIKPRTENQAQYVTNIVTHDITFGIGPAGTGKTYLAVAAA
VDALERQEVRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFERVEKLIERNVIEVAPLAYMRGRTLND
AFIILDESQNTTVEQMKMFLTRIGFNSRAVITGDVTQIDLPRGAKSGLRHAVEVLSEVDEISFNFFIADDVVRHPVVARI
VNAYEKWETNDQKERKLGEQRRKEERDARLLDSENN

Sequences:

>Translated_356_residues
MSIKTTKLELTLEPANNKRLSNLCGPFDDNIKHLERRLGVEVNYRGNLFTVVGQPHTVSAAVDILRDLYVNTAPIKNQYP
DIEPEQIHLAVKESGVLEQPSEAVTTLPYGKEIFIKTKKGLIKPRTENQAQYVTNIVTHDITFGIGPAGTGKTYLAVAAA
VDALERQEVRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFERVEKLIERNVIEVAPLAYMRGRTLND
AFIILDESQNTTVEQMKMFLTRIGFNSRAVITGDVTQIDLPRGAKSGLRHAVEVLSEVDEISFNFFIADDVVRHPVVARI
VNAYEKWETNDQKERKLGEQRRKEERDARLLDSENN
>Mature_355_residues
SIKTTKLELTLEPANNKRLSNLCGPFDDNIKHLERRLGVEVNYRGNLFTVVGQPHTVSAAVDILRDLYVNTAPIKNQYPD
IEPEQIHLAVKESGVLEQPSEAVTTLPYGKEIFIKTKKGLIKPRTENQAQYVTNIVTHDITFGIGPAGTGKTYLAVAAAV
DALERQEVRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFERVEKLIERNVIEVAPLAYMRGRTLNDA
FIILDESQNTTVEQMKMFLTRIGFNSRAVITGDVTQIDLPRGAKSGLRHAVEVLSEVDEISFNFFIADDVVRHPVVARIV
NAYEKWETNDQKERKLGEQRRKEERDARLLDSENN

Specific function: Unknown

COG id: COG1702

COG function: function code T; Phosphate starvation-inducible protein PhoH, predicted ATPase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phoH family [H]

Homologues:

Organism=Escherichia coli, GI145693103, Length=350, Percent_Identity=76.5714285714286, Blast_Score=529, Evalue=1e-151,
Organism=Escherichia coli, GI1787257, Length=205, Percent_Identity=45.3658536585366, Blast_Score=189, Evalue=2e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003714 [H]

Pfam domain/function: PF02562 PhoH [H]

EC number: NA

Molecular weight: Translated: 40168; Mature: 40037

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKTTKLELTLEPANNKRLSNLCGPFDDNIKHLERRLGVEVNYRGNLFTVVGQPHTVSA
CCCEEEEEEEEECCCCCCHHHHHCCCCCHHHHHHHHHHCEEEEECCCEEEEECCCCHHHH
AVDILRDLYVNTAPIKNQYPDIEPEQIHLAVKESGVLEQPSEAVTTLPYGKEIFIKTKKG
HHHHHHHHHCCCCCCCCCCCCCCHHHEEEEEECCCCCCCCCHHHEECCCCCEEEEEECCC
LIKPRTENQAQYVTNIVTHDITFGIGPAGTGKTYLAVAAAVDALERQEVRRILLTRPAVE
CCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH
AGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFERVEKLIERNVIEVAPLAYMRGRTLND
HHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHCCCCCCC
AFIILDESQNTTVEQMKMFLTRIGFNSRAVITGDVTQIDLPRGAKSGLRHAVEVLSEVDE
EEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCHHHHHHHHHHHHHHHHH
ISFNFFIADDVVRHPVVARIVNAYEKWETNDQKERKLGEQRRKEERDARLLDSENN
HCEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SIKTTKLELTLEPANNKRLSNLCGPFDDNIKHLERRLGVEVNYRGNLFTVVGQPHTVSA
CCEEEEEEEEECCCCCCHHHHHCCCCCHHHHHHHHHHCEEEEECCCEEEEECCCCHHHH
AVDILRDLYVNTAPIKNQYPDIEPEQIHLAVKESGVLEQPSEAVTTLPYGKEIFIKTKKG
HHHHHHHHHCCCCCCCCCCCCCCHHHEEEEEECCCCCCCCCHHHEECCCCCEEEEEECCC
LIKPRTENQAQYVTNIVTHDITFGIGPAGTGKTYLAVAAAVDALERQEVRRILLTRPAVE
CCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH
AGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFERVEKLIERNVIEVAPLAYMRGRTLND
HHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHCCCCCCC
AFIILDESQNTTVEQMKMFLTRIGFNSRAVITGDVTQIDLPRGAKSGLRHAVEVLSEVDE
EEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCHHHHHHHHHHHHHHHHH
ISFNFFIADDVVRHPVVARIVNAYEKWETNDQKERKLGEQRRKEERDARLLDSENN
HCEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]