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The map label for this gene is ybeY [C]

Identifier: 209694557

GI number: 209694557

Start: 1098413

End: 1098874

Strand: Reverse

Name: ybeY [C]

Synonym: VSAL_I0994

Alternate gene names: 209694557

Gene position: 1098874-1098413 (Counterclockwise)

Preceding gene: 209694558

Following gene: 209694556

Centisome position: 33.05

GC content: 37.88

Gene sequence:

>462_bases
ATGAGCATTGAACTCGATCTACAAATTGCATGTGAAAATGAAAAAGACTTGCCTTCAGAAAAAGATTTTATGTCTTGGTT
GAATGCAGTGTTGCCTCAGTTTCAGCCACAAGCAGAATTAACGATTCGAATTGTAGATGAAAAAGAAAGTCACGAACTAA
ACCATCAATATCGTGGTATGGACAAACCAACAAATGTATTGTCATTTCCTTTTGAAGCACCACCAGAAGTAGAAATTGAT
TTACTCGGTGATTTAATCATCTGCCGTCAAGTTGTTGAAAAAGAAGCTGTTGAACAAAACAAGCCTTTATTAGCACATTG
GGCGCATATGGTTGTACATGGCAGTCTCCATCTGCTAGGTTATGACCATATCGAAGATGAGGAAGCTGAAGAGATGGAAT
CACTCGAAACAGAATTAATGCAAGAAATGGGATTTGAAGACCCATATCTCGCTGAGAAATAA

Upstream 100 bases:

>100_bases
TCAAAAAGAGCGTAAACTAGGAGAACAGCGTCGAAAAGAAGAACGTGATGCACGTTTACTCGATTCTGAAAACAACTAGT
ACAATAATTTCAGGTGAACC

Downstream 100 bases:

>100_bases
TTGTTGGAATAATCCAACAGTTACCTATGTGAGCTATCCACATTGATAGCAACTACTTTTAAAGAAGCCATGAACGACGA
AAATTCACAAAATACAGAAG

Product: metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 152

Protein sequence:

>153_residues
MSIELDLQIACENEKDLPSEKDFMSWLNAVLPQFQPQAELTIRIVDEKESHELNHQYRGMDKPTNVLSFPFEAPPEVEID
LLGDLIICRQVVEKEAVEQNKPLLAHWAHMVVHGSLHLLGYDHIEDEEAEEMESLETELMQEMGFEDPYLAEK

Sequences:

>Translated_153_residues
MSIELDLQIACENEKDLPSEKDFMSWLNAVLPQFQPQAELTIRIVDEKESHELNHQYRGMDKPTNVLSFPFEAPPEVEID
LLGDLIICRQVVEKEAVEQNKPLLAHWAHMVVHGSLHLLGYDHIEDEEAEEMESLETELMQEMGFEDPYLAEK
>Mature_152_residues
SIELDLQIACENEKDLPSEKDFMSWLNAVLPQFQPQAELTIRIVDEKESHELNHQYRGMDKPTNVLSFPFEAPPEVEIDL
LGDLIICRQVVEKEAVEQNKPLLAHWAHMVVHGSLHLLGYDHIEDEEAEEMESLETELMQEMGFEDPYLAEK

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=149, Percent_Identity=73.8255033557047, Blast_Score=218, Evalue=1e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_ALISL (B6EIN6)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002262485.1
- ProteinModelPortal:   B6EIN6
- GeneID:   6986766
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I0994
- HOGENOM:   HBG734136
- OMA:   FTDPYKE
- ProtClustDB:   PRK00016
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17700; Mature: 17569

Theoretical pI: Translated: 4.03; Mature: 4.03

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIELDLQIACENEKDLPSEKDFMSWLNAVLPQFQPQAELTIRIVDEKESHELNHQYRGM
CCEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHCCC
DKPTNVLSFPFEAPPEVEIDLLGDLIICRQVVEKEAVEQNKPLLAHWAHMVVHGSLHLLG
CCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEE
YDHIEDEEAEEMESLETELMQEMGFEDPYLAEK
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SIELDLQIACENEKDLPSEKDFMSWLNAVLPQFQPQAELTIRIVDEKESHELNHQYRGM
CEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHCCC
DKPTNVLSFPFEAPPEVEIDLLGDLIICRQVVEKEAVEQNKPLLAHWAHMVVHGSLHLLG
CCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEE
YDHIEDEEAEEMESLETELMQEMGFEDPYLAEK
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA