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The map label for this gene is rlpA [C]

Identifier: 209694546

GI number: 209694546

Start: 1086079

End: 1086888

Strand: Reverse

Name: rlpA [C]

Synonym: VSAL_I0983

Alternate gene names: 209694546

Gene position: 1086888-1086079 (Counterclockwise)

Preceding gene: 209694547

Following gene: 209694545

Centisome position: 32.69

GC content: 37.04

Gene sequence:

>810_bases
ATGCGTATTCTTCTACTGGTTATTTCTCTTATTTTGGTTGGTTGTGCTTCTGAACCACCAATAAAAAATACAGATGAGCC
TAATGCAGGGCGTTATCAAATAGATAATGATATTGCCCCAAATACCCCAATTTCGGTGGAACATATAGAAGATGCCCATC
CTCGTTATGAACCTAAAAGCTTATACGGCAACAAAGACTACACGTTATTAGGTAAAGACTATCCTATTGTTCGAGATCCT
AAAGGATTTAAGCAAGAAGGGAAAAGCTCTTGGTACGGCAATAAATTTCATGGTCATAAAACCTCCAATGGTGAGATTTA
TGATATGTACTCAATGAGTGCTGCACACAAAACACTTCCGATACCAAGCTATGTAAAAGTCATCAATAAGGACAATGGAA
AAACAGCCATTGTTCGAGTAAATGATCGTGGTCCTTTCCATGAAGGACGCATAATAGATTTAAGCTTTGCTGCTGCCACA
AAATTAGATGTGATAAAAACGGGAACAGCCAACGTAAAAATTGAATATATTTCTATCGATAAACCAACGAATGCTCAGGA
ATGGCACGCGATCGATCCTAATCAATATTATATTCAAATGGTGGCAGTAAAAAGTGAACAAAGTGCCAATTCAATAGCAA
AAAAACTACAAACACAATTTAATGCACCGACACATATTGTGAAATCAAAATCGATTTATCGCGTTCGTCTGGGCCCGTTT
ATTGACAGAGATATTGCAGATAAAACATTGCTCGATGCAAAAAATGGACAATACACCTCAGCGTTTATCATCCAAGAAGC
AAAGAAATAA

Upstream 100 bases:

>100_bases
TAGTTATGGCGGTACATCAATGGTAACGTTGATGGCAGGATTTGGCATTTTAATGTCAATACACACACATAAAAAAATAC
ACTCCAAGGCAAACTAACTC

Downstream 100 bases:

>100_bases
ACACCTAATTGGTTCATATTATCAACAGAAATGTCAATATTAAGTAAAGATTGTAACTAAATCGCCTGAAGCCGTAATAA
ATGCAATTTTATATGAACTA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MRILLLVISLILVGCASEPPIKNTDEPNAGRYQIDNDIAPNTPISVEHIEDAHPRYEPKSLYGNKDYTLLGKDYPIVRDP
KGFKQEGKSSWYGNKFHGHKTSNGEIYDMYSMSAAHKTLPIPSYVKVINKDNGKTAIVRVNDRGPFHEGRIIDLSFAAAT
KLDVIKTGTANVKIEYISIDKPTNAQEWHAIDPNQYYIQMVAVKSEQSANSIAKKLQTQFNAPTHIVKSKSIYRVRLGPF
IDRDIADKTLLDAKNGQYTSAFIIQEAKK

Sequences:

>Translated_269_residues
MRILLLVISLILVGCASEPPIKNTDEPNAGRYQIDNDIAPNTPISVEHIEDAHPRYEPKSLYGNKDYTLLGKDYPIVRDP
KGFKQEGKSSWYGNKFHGHKTSNGEIYDMYSMSAAHKTLPIPSYVKVINKDNGKTAIVRVNDRGPFHEGRIIDLSFAAAT
KLDVIKTGTANVKIEYISIDKPTNAQEWHAIDPNQYYIQMVAVKSEQSANSIAKKLQTQFNAPTHIVKSKSIYRVRLGPF
IDRDIADKTLLDAKNGQYTSAFIIQEAKK
>Mature_269_residues
MRILLLVISLILVGCASEPPIKNTDEPNAGRYQIDNDIAPNTPISVEHIEDAHPRYEPKSLYGNKDYTLLGKDYPIVRDP
KGFKQEGKSSWYGNKFHGHKTSNGEIYDMYSMSAAHKTLPIPSYVKVINKDNGKTAIVRVNDRGPFHEGRIIDLSFAAAT
KLDVIKTGTANVKIEYISIDKPTNAQEWHAIDPNQYYIQMVAVKSEQSANSIAKKLQTQFNAPTHIVKSKSIYRVRLGPF
IDRDIADKTLLDAKNGQYTSAFIIQEAKK

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=124, Percent_Identity=45.9677419354839, Blast_Score=112, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 30192; Mature: 30192

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILLLVISLILVGCASEPPIKNTDEPNAGRYQIDNDIAPNTPISVEHIEDAHPRYEPKS
CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEHEECCCCCCCCCCHH
LYGNKDYTLLGKDYPIVRDPKGFKQEGKSSWYGNKFHGHKTSNGEIYDMYSMSAAHKTLP
HCCCCCEEEECCCCCCEECCCCHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
IPSYVKVINKDNGKTAIVRVNDRGPFHEGRIIDLSFAAATKLDVIKTGTANVKIEYISID
CHHHHHEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEEEC
KPTNAQEWHAIDPNQYYIQMVAVKSEQSANSIAKKLQTQFNAPTHIVKSKSIYRVRLGPF
CCCCCCCCEEECCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCEEEEEECCC
IDRDIADKTLLDAKNGQYTSAFIIQEAKK
CCCCCCCHHEEECCCCCEEEEEEEEECCC
>Mature Secondary Structure
MRILLLVISLILVGCASEPPIKNTDEPNAGRYQIDNDIAPNTPISVEHIEDAHPRYEPKS
CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEHEECCCCCCCCCCHH
LYGNKDYTLLGKDYPIVRDPKGFKQEGKSSWYGNKFHGHKTSNGEIYDMYSMSAAHKTLP
HCCCCCEEEECCCCCCEECCCCHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
IPSYVKVINKDNGKTAIVRVNDRGPFHEGRIIDLSFAAATKLDVIKTGTANVKIEYISID
CHHHHHEEECCCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEEEC
KPTNAQEWHAIDPNQYYIQMVAVKSEQSANSIAKKLQTQFNAPTHIVKSKSIYRVRLGPF
CCCCCCCCEEECCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCEEEEEECCC
IDRDIADKTLLDAKNGQYTSAFIIQEAKK
CCCCCCCHHEEECCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]