| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694534
Identifier: 209694534
GI number: 209694534
Start: 1069145
End: 1071484
Strand: Reverse
Name: 209694534
Synonym: VSAL_I0969
Alternate gene names: NA
Gene position: 1071484-1069145 (Counterclockwise)
Preceding gene: 209694535
Following gene: 209694533
Centisome position: 32.22
GC content: 34.66
Gene sequence:
>2340_bases ATGAATTCCTCAACACTTAAGAGCTTATCCAAATTAGAAGTCATACGCTCTAGCAAATACTTTGAATGGTTAAACTCTAT CGCAAGAACACACATCAATGATGACTCCTATCGCAATAGAGTTTTAAATATTTATGCAGCCTATATTTACATAACAGAAC CCAAACCCTATTCATTCTCAGGAACGAATATATTAAATAACAGTCATGCAATAAATGAACACCTTCAATTACTGATTGGA TTTATCTATTCAGAAATAAGCTTCGGAACCAGAGCAAAATATGACCATACAAGATACGTATATGCGATATTTTCCACTAT AGCGAGTAACTTACAGCTAAGCTTATCTAGCATTGATATTAAAAAAAGTAGAATTAGCGATGATATAACGCAATATATAG TTGAATATAATGATCTAGACCTTAATCAAGGTAAGTTGAACTACCTCAATGGCTGGCAAATTAAATCAAAAGAAGGGGCA GTTTTAGAAGTCAATCTTGACTCAATTTTTTGCCAGTATGGCTCTAACTTTACTGAAAAAATTCATCATGCATTACAAAA TTATGGACTAAAACACAAATCTGCAACATTAAAAAGCACTACATCCGCTCTTTGTTATCACTTATTGTACTTTTTCACCC TCAATAAAAATCAATCACTTAAAGAGCTCTATATCAAATTATCTGCTAGAAATGTTCAACATTACTTTGCTGAGATTATG GATATAGGTTTTGCTAGAGCCAAAATTGAAGGTCACGATGAAAACACTTTTTATATTCTCTGGAATCGAGCGATCCAAAC CTATATTGTATGTTTTATTAAAATCGGTTTTTTTGAAGCTCCTATTAAACCTTTCTTAACTCCTAAATGGAAAAAACCTG TTAATGAAAACTTATCATTCAGCATTGGTGGTAAGACAACGGAAAATGAAGCTGAACGTTGGTTTAGTAATATAGGTCTA CACATCAAAGACGAAGAGGCAGTAGCCGAAATTCAATATCGACTCAATAAAGATTTAAACTATATTCACTTAGTATGCAC ACATATTTTTGAGCAAGTAAAAGCCATTAATATCCGTAATAAGAAATACCTTCTCGCGGGTAAGATTAAACCTCTAAAAA AACTAACACATAACGATCAATGCCCTATTGGTCCAGAAAATCTTGAAAACACCATAGCCACATTTTTCCATCACGGTATT GGAGGAAAACATAATGCCTATAGTAGTTTTTTAGGATTTGTAGGCAATACTCCTCTCCTTACCAAAGAACTAGCACTCCC TACCCTTTTAACATTGAACGCAATTCTATCTCTATTGATTTTAAATCATCCCAAAATTACACCTAGTTGGCTTCAAGAGT GGGAGCTGCTTGACAAAAAAGGGAATAGATCTGGTTACAAACAGGTTGGGGACCAATGGATGATTATATCCCTCAAAAAT CGAAGAGGAGCAACTCTTGCACAACAAGAGGTTGTTCTTAATAAGAAATCTAAGGAGATAGTTGATTTTTTAATCGAACA TACTCTTTTGGCGAGAGAGCGATTAAAGGCTCTCGGTGATGCTAACTGGCGAAAAATGATCATCACCGCCACACCAAGTA AAGTAGCTACATATAAAAGCTTAGGCTCCAGCTTGTCCTGCGATATTTCTTTTTACGAAACCTTAAGAAACTATAAAAAC TTACCTCATGGACACATACTTAATCAAAACGATGTTAATGCTATTTCTGAAATATTTTCACTACGTTCACTTCGCCGCCA CCGGGGCTTACAAATCTATCTTGAAACAGAATCCATGGGGGCTGTTGCAAGAGCATTAGGACATAAAAGAGTCCAATTAC ATTTGCTAGAAGGCGTTTACCTACCTAAGCCTCTTATGGATTTTTTCCTTGAGCGCATTATACGTCAATTTCAAAACTCC ATTTTATTTGAAGCAATGAAAGAGTCTCAGTACCTCTTAGATGCTGTCGATATATCAGAAGGAAATATCACCGAGTTTCT TGAACATCATGGTATCAGCGACATTCCTTTCTATCTAGGGAACAGTGCGAATACACAAACAAAAGTAAAAGATATAGTTC TTTCTTTTGATGGTATCGTATTCACTATCAGTACAGCATTGTTGCAATTGCTTATTGCGATAAAAACAACAGTTGAAACA GCAATTGAAGATACACAATTTAAAGAGATTGTCGAACATTGGTATCAATGCGCGTTATTTATTCTATTATCTTTAGAAAC AGACCAATACAATGAAGAAGATGATTATAAAAATATGCTAGAAAATGCTAGGGCGAACCCAATGGATAATAATAGAATCA TGGGAGCGTTAATATGCTAA
Upstream 100 bases:
>100_bases AAATAAAGAAAAAAGAATAAGTAGAATACCCGAAACTTAATTGACAGTTATCAATCGTCTACATATGCTTTTATTATGTA CAATTATTTAAGTGATATGC
Downstream 100 bases:
>100_bases AACCTCATTTAAAGCTAATAGAAGATATAAAATCAGAAGAACGTACATTTTCCTCTCTTTCTAAATTCGAACTTGAAGAA ATGTATAAAATTTCAATTGC
Product: phage protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 779; Mature: 779
Protein sequence:
>779_residues MNSSTLKSLSKLEVIRSSKYFEWLNSIARTHINDDSYRNRVLNIYAAYIYITEPKPYSFSGTNILNNSHAINEHLQLLIG FIYSEISFGTRAKYDHTRYVYAIFSTIASNLQLSLSSIDIKKSRISDDITQYIVEYNDLDLNQGKLNYLNGWQIKSKEGA VLEVNLDSIFCQYGSNFTEKIHHALQNYGLKHKSATLKSTTSALCYHLLYFFTLNKNQSLKELYIKLSARNVQHYFAEIM DIGFARAKIEGHDENTFYILWNRAIQTYIVCFIKIGFFEAPIKPFLTPKWKKPVNENLSFSIGGKTTENEAERWFSNIGL HIKDEEAVAEIQYRLNKDLNYIHLVCTHIFEQVKAINIRNKKYLLAGKIKPLKKLTHNDQCPIGPENLENTIATFFHHGI GGKHNAYSSFLGFVGNTPLLTKELALPTLLTLNAILSLLILNHPKITPSWLQEWELLDKKGNRSGYKQVGDQWMIISLKN RRGATLAQQEVVLNKKSKEIVDFLIEHTLLARERLKALGDANWRKMIITATPSKVATYKSLGSSLSCDISFYETLRNYKN LPHGHILNQNDVNAISEIFSLRSLRRHRGLQIYLETESMGAVARALGHKRVQLHLLEGVYLPKPLMDFFLERIIRQFQNS ILFEAMKESQYLLDAVDISEGNITEFLEHHGISDIPFYLGNSANTQTKVKDIVLSFDGIVFTISTALLQLLIAIKTTVET AIEDTQFKEIVEHWYQCALFILLSLETDQYNEEDDYKNMLENARANPMDNNRIMGALIC
Sequences:
>Translated_779_residues MNSSTLKSLSKLEVIRSSKYFEWLNSIARTHINDDSYRNRVLNIYAAYIYITEPKPYSFSGTNILNNSHAINEHLQLLIG FIYSEISFGTRAKYDHTRYVYAIFSTIASNLQLSLSSIDIKKSRISDDITQYIVEYNDLDLNQGKLNYLNGWQIKSKEGA VLEVNLDSIFCQYGSNFTEKIHHALQNYGLKHKSATLKSTTSALCYHLLYFFTLNKNQSLKELYIKLSARNVQHYFAEIM DIGFARAKIEGHDENTFYILWNRAIQTYIVCFIKIGFFEAPIKPFLTPKWKKPVNENLSFSIGGKTTENEAERWFSNIGL HIKDEEAVAEIQYRLNKDLNYIHLVCTHIFEQVKAINIRNKKYLLAGKIKPLKKLTHNDQCPIGPENLENTIATFFHHGI GGKHNAYSSFLGFVGNTPLLTKELALPTLLTLNAILSLLILNHPKITPSWLQEWELLDKKGNRSGYKQVGDQWMIISLKN RRGATLAQQEVVLNKKSKEIVDFLIEHTLLARERLKALGDANWRKMIITATPSKVATYKSLGSSLSCDISFYETLRNYKN LPHGHILNQNDVNAISEIFSLRSLRRHRGLQIYLETESMGAVARALGHKRVQLHLLEGVYLPKPLMDFFLERIIRQFQNS ILFEAMKESQYLLDAVDISEGNITEFLEHHGISDIPFYLGNSANTQTKVKDIVLSFDGIVFTISTALLQLLIAIKTTVET AIEDTQFKEIVEHWYQCALFILLSLETDQYNEEDDYKNMLENARANPMDNNRIMGALIC >Mature_779_residues MNSSTLKSLSKLEVIRSSKYFEWLNSIARTHINDDSYRNRVLNIYAAYIYITEPKPYSFSGTNILNNSHAINEHLQLLIG FIYSEISFGTRAKYDHTRYVYAIFSTIASNLQLSLSSIDIKKSRISDDITQYIVEYNDLDLNQGKLNYLNGWQIKSKEGA VLEVNLDSIFCQYGSNFTEKIHHALQNYGLKHKSATLKSTTSALCYHLLYFFTLNKNQSLKELYIKLSARNVQHYFAEIM DIGFARAKIEGHDENTFYILWNRAIQTYIVCFIKIGFFEAPIKPFLTPKWKKPVNENLSFSIGGKTTENEAERWFSNIGL HIKDEEAVAEIQYRLNKDLNYIHLVCTHIFEQVKAINIRNKKYLLAGKIKPLKKLTHNDQCPIGPENLENTIATFFHHGI GGKHNAYSSFLGFVGNTPLLTKELALPTLLTLNAILSLLILNHPKITPSWLQEWELLDKKGNRSGYKQVGDQWMIISLKN RRGATLAQQEVVLNKKSKEIVDFLIEHTLLARERLKALGDANWRKMIITATPSKVATYKSLGSSLSCDISFYETLRNYKN LPHGHILNQNDVNAISEIFSLRSLRRHRGLQIYLETESMGAVARALGHKRVQLHLLEGVYLPKPLMDFFLERIIRQFQNS ILFEAMKESQYLLDAVDISEGNITEFLEHHGISDIPFYLGNSANTQTKVKDIVLSFDGIVFTISTALLQLLIAIKTTVET AIEDTQFKEIVEHWYQCALFILLSLETDQYNEEDDYKNMLENARANPMDNNRIMGALIC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 89408; Mature: 89408
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSSTLKSLSKLEVIRSSKYFEWLNSIARTHINDDSYRNRVLNIYAAYIYITEPKPYSFS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEEEEEEEEEECCCCCCCC GTNILNNSHAINEHLQLLIGFIYSEISFGTRAKYDHTRYVYAIFSTIASNLQLSLSSIDI CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHEEEHHHHHH KKSRISDDITQYIVEYNDLDLNQGKLNYLNGWQIKSKEGAVLEVNLDSIFCQYGSNFTEK HHHHHHHHHHHHHHHHCCCCCCCCCEECCCCEEEECCCCCEEEEEHHHHHHHHCCCHHHH IHHALQNYGLKHKSATLKSTTSALCYHLLYFFTLNKNQSLKELYIKLSARNVQHYFAEIM HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH DIGFARAKIEGHDENTFYILWNRAIQTYIVCFIKIGFFEAPIKPFLTPKWKKPVNENLSF HCCHHEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE SIGGKTTENEAERWFSNIGLHIKDEEAVAEIQYRLNKDLNYIHLVCTHIFEQVKAINIRN EECCCCCHHHHHHHHHHCCCEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC KKYLLAGKIKPLKKLTHNDQCPIGPENLENTIATFFHHGIGGKHNAYSSFLGFVGNTPLL CEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCH TKELALPTLLTLNAILSLLILNHPKITPSWLQEWELLDKKGNRSGYKQVGDQWMIISLKN HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCCEEEEEECC RRGATLAQQEVVLNKKSKEIVDFLIEHTLLARERLKALGDANWRKMIITATPSKVATYKS CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHH LGSSLSCDISFYETLRNYKNLPHGHILNQNDVNAISEIFSLRSLRRHRGLQIYLETESMG CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHH AVARALGHKRVQLHLLEGVYLPKPLMDFFLERIIRQFQNSILFEAMKESQYLLDAVDISE HHHHHHCCHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEEECCC GNITEFLEHHGISDIPFYLGNSANTQTKVKDIVLSFDGIVFTISTALLQLLIAIKTTVET CCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH AIEDTQFKEIVEHWYQCALFILLSLETDQYNEEDDYKNMLENARANPMDNNRIMGALIC HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECC >Mature Secondary Structure MNSSTLKSLSKLEVIRSSKYFEWLNSIARTHINDDSYRNRVLNIYAAYIYITEPKPYSFS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEEEEEEEEEECCCCCCCC GTNILNNSHAINEHLQLLIGFIYSEISFGTRAKYDHTRYVYAIFSTIASNLQLSLSSIDI CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHEEEHHHHHH KKSRISDDITQYIVEYNDLDLNQGKLNYLNGWQIKSKEGAVLEVNLDSIFCQYGSNFTEK HHHHHHHHHHHHHHHHCCCCCCCCCEECCCCEEEECCCCCEEEEEHHHHHHHHCCCHHHH IHHALQNYGLKHKSATLKSTTSALCYHLLYFFTLNKNQSLKELYIKLSARNVQHYFAEIM HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH DIGFARAKIEGHDENTFYILWNRAIQTYIVCFIKIGFFEAPIKPFLTPKWKKPVNENLSF HCCHHEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE SIGGKTTENEAERWFSNIGLHIKDEEAVAEIQYRLNKDLNYIHLVCTHIFEQVKAINIRN EECCCCCHHHHHHHHHHCCCEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC KKYLLAGKIKPLKKLTHNDQCPIGPENLENTIATFFHHGIGGKHNAYSSFLGFVGNTPLL CEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCH TKELALPTLLTLNAILSLLILNHPKITPSWLQEWELLDKKGNRSGYKQVGDQWMIISLKN HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCCEEEEEECC RRGATLAQQEVVLNKKSKEIVDFLIEHTLLARERLKALGDANWRKMIITATPSKVATYKS CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHH LGSSLSCDISFYETLRNYKNLPHGHILNQNDVNAISEIFSLRSLRRHRGLQIYLETESMG CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHH AVARALGHKRVQLHLLEGVYLPKPLMDFFLERIIRQFQNSILFEAMKESQYLLDAVDISE HHHHHHCCHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEEECCC GNITEFLEHHGISDIPFYLGNSANTQTKVKDIVLSFDGIVFTISTALLQLLIAIKTTVET CCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH AIEDTQFKEIVEHWYQCALFILLSLETDQYNEEDDYKNMLENARANPMDNNRIMGALIC HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA