Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is yeaZ [H]

Identifier: 209694481

GI number: 209694481

Start: 1009618

End: 1010319

Strand: Reverse

Name: yeaZ [H]

Synonym: VSAL_I0910

Alternate gene names: 209694481

Gene position: 1010319-1009618 (Counterclockwise)

Preceding gene: 209694482

Following gene: 209694480

Centisome position: 30.38

GC content: 43.73

Gene sequence:

>702_bases
ATGAGCGTAAAAATTTTAGCGGTAGATACCGCCACTGAAAACTGTTCTGTCGCATTAATCATTGACGGAAAAGTCCATTC
TCGAAGTGCAGTGGCACCGCGTGAACACACCATTAAGATTCTTCCGTTTGTGGATGAAGTATTAAAAGAAGCGGGTGTGC
GTTTGCAAGATTTAGATGCATTAGCATTTGGACAAGGTCCTGGTAGCTTTACCGGTGTTCGTATTGGTATTGGTATTGCT
CAAGGTTTGGCGTTTGGTGCCGATTTACCTATGATAGGTATTTCTACATTAGAAGCAATGGCTCAAGCGGCTTACCGTAT
TCATGGTGCAACACAAATTGCAGGCGCAATTGATGCACGAATGAGTGAAGTCTATTTTGGCATGTATCAACGTAATGACG
ATGCAACGTGGTCACCACTTGTCTCTGATATGGTTTCAGTTCCGGCTGAATTAGCGGCTAAACTACCAGATCAAACGGGT
GAATGGCTAACGGTAGGCACTGGTTGGGATGCTTATCCTGATGCATTAGAGACATTGCCTCTTGAGACAAAGGCGAGTGA
TATTCTATACCCTGAAGCTCAGGATATGGCGATACTTGCATTACAAAAATTTGAACAAGGCTTAGCGGTTCCTGTTGAGG
AATCAACGCCTGTTTATGTTCGTGATACCGTGACATGGAAAAAATTACCAGGTCGTGAGTAA

Upstream 100 bases:

>100_bases
AGAACTCGAGATTTAAAAAATGTGTCTGAATTTTTAGCGAAAGCAGATCAACATAAAAAATTAGAGAAACAAGAAGTTAT
TTTAGAAAATTGAGGCACTA

Downstream 100 bases:

>100_bases
TCTTTCTATCTCTAACAGCGAGCTTAATTAGCTCGCTGTTATTATTAATTTAAAAGGCCACTATGGTTTCTATTCAGGGT
TTACCTCCTGCGCTAATACA

Product: glycoprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MSVKILAVDTATENCSVALIIDGKVHSRSAVAPREHTIKILPFVDEVLKEAGVRLQDLDALAFGQGPGSFTGVRIGIGIA
QGLAFGADLPMIGISTLEAMAQAAYRIHGATQIAGAIDARMSEVYFGMYQRNDDATWSPLVSDMVSVPAELAAKLPDQTG
EWLTVGTGWDAYPDALETLPLETKASDILYPEAQDMAILALQKFEQGLAVPVEESTPVYVRDTVTWKKLPGRE

Sequences:

>Translated_233_residues
MSVKILAVDTATENCSVALIIDGKVHSRSAVAPREHTIKILPFVDEVLKEAGVRLQDLDALAFGQGPGSFTGVRIGIGIA
QGLAFGADLPMIGISTLEAMAQAAYRIHGATQIAGAIDARMSEVYFGMYQRNDDATWSPLVSDMVSVPAELAAKLPDQTG
EWLTVGTGWDAYPDALETLPLETKASDILYPEAQDMAILALQKFEQGLAVPVEESTPVYVRDTVTWKKLPGRE
>Mature_232_residues
SVKILAVDTATENCSVALIIDGKVHSRSAVAPREHTIKILPFVDEVLKEAGVRLQDLDALAFGQGPGSFTGVRIGIGIAQ
GLAFGADLPMIGISTLEAMAQAAYRIHGATQIAGAIDARMSEVYFGMYQRNDDATWSPLVSDMVSVPAELAAKLPDQTGE
WLTVGTGWDAYPDALETLPLETKASDILYPEAQDMAILALQKFEQGLAVPVEESTPVYVRDTVTWKKLPGRE

Specific function: Unknown

COG id: COG1214

COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M22 family [H]

Homologues:

Organism=Escherichia coli, GI1788109, Length=231, Percent_Identity=52.8138528138528, Blast_Score=254, Evalue=4e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022496
- InterPro:   IPR000905 [H]

Pfam domain/function: PF00814 Peptidase_M22 [H]

EC number: NA

Molecular weight: Translated: 25016; Mature: 24885

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKILAVDTATENCSVALIIDGKVHSRSAVAPREHTIKILPFVDEVLKEAGVRLQDLDA
CCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCEEECCCE
LAFGQGPGSFTGVRIGIGIAQGLAFGADLPMIGISTLEAMAQAAYRIHGATQIAGAIDAR
EEECCCCCCCCEEEEEEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
MSEVYFGMYQRNDDATWSPLVSDMVSVPAELAAKLPDQTGEWLTVGTGWDAYPDALETLP
HHHHHHHHEECCCCCCHHHHHHHHHHCCHHHHHHCCCCCCCEEEECCCCCCCCHHHHHCC
LETKASDILYPEAQDMAILALQKFEQGLAVPVEESTPVYVRDTVTWKKLPGRE
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCEEEEECEEEECCCCCC
>Mature Secondary Structure 
SVKILAVDTATENCSVALIIDGKVHSRSAVAPREHTIKILPFVDEVLKEAGVRLQDLDA
CEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCEEECCCE
LAFGQGPGSFTGVRIGIGIAQGLAFGADLPMIGISTLEAMAQAAYRIHGATQIAGAIDAR
EEECCCCCCCCEEEEEEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
MSEVYFGMYQRNDDATWSPLVSDMVSVPAELAAKLPDQTGEWLTVGTGWDAYPDALETLP
HHHHHHHHEECCCCCCHHHHHHHHHHCCHHHHHHCCCCCCCEEEECCCCCCCCHHHHHCC
LETKASDILYPEAQDMAILALQKFEQGLAVPVEESTPVYVRDTVTWKKLPGRE
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCEEEEECEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]