Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694450

Identifier: 209694450

GI number: 209694450

Start: 975139

End: 976839

Strand: Reverse

Name: 209694450

Synonym: VSAL_I0874

Alternate gene names: NA

Gene position: 976839-975139 (Counterclockwise)

Preceding gene: 209694451

Following gene: 209694449

Centisome position: 29.38

GC content: 40.68

Gene sequence:

>1701_bases
ATGGTGGTGAGCAACATGGATGCACATCGTTCAACGTACGCTGAAACTCATCTGCGTAAACCTGAAATTGTAATGGCGCC
GGAAAGACTGGGTGCAATGCACCAAAATAGAATCAGTTTTGTTCGTAGCTTAATACGCAAAATGGCACAGCAAGAGTGGC
AAGTCACTAAGTATGAATGGCAATTATCACCACAAGGTTTTGGTCATGTTATTTATAAATTAGTGACACCGAATGATACG
TATCATTTGGTTGTTTTTTGTGACGAAATTGCAGATGAAGAACGTAATGATCGTGTTATTGCTGAAAAGTGGGACGTAAC
GTTTGCTTTGGTTCTTGGGGAGGTAAATGTCGATTTATTAAGCCAATTAAGAGCCAATGTTCCATTGCAAGAAGCGGGTA
GAAACTCAAATAATGTCTTGGTGTTAGCAAGAGCAAATAAAAGTGTTCGAGTGTTTGATCATCTTGTCTCTCATTTATCT
AGAGGCGAACAACCCAATCAAAAAGAGCTTGCCGAGGTGGGGTATATTTTAAGAACGACCGCGGTGTATGGTAATGGTAA
ATTTGGTATTGCAGACTTTAAATTGTTAGAAAACAATGCCGATTTTAATCAGTCTTTTAGCGCTCAAATGTGTGCTGTTT
ATTTATTACGTCAGTTCAGTTTGGACTGGGTTCATTATTTAGCGACAGAGCAAGGGGGAGTGAATGCCGTTACTCTCGAT
CGTGAATTGCAACGCTATCTTGGTGTTGGTAATGCGACAGGGTTAGGGATGGCTCCTTATTTAATTAACCATCCTTGCAT
TGTTGATCAGTGGATGTTCGCACGAGAAATGGCGTTATCTGCGGTACTTAATGCGCCTGTAATACGAGAGAGAAAAGAGC
CATTACAAACGTTATTGCGCAAAGGCGTAAGACATTTACAGCAAGTGATCACGATTAATGAACACCAAGATGCGCTAAAT
CATCGTGCGGTTTCTGAGCTTAACGAATTGATTGCCAGTTTAGATAACATCGTGGCGAAAAGTTCGACTTGGGAAGACGT
CGTTACCCATTCAAATGGTATGAGTTTAGAAGCTCAAGAAATGTTGCTCTCTTGTTTGATGGAAATCTATCCTGAATTAG
TTGATCGCTTTGAAGAACAAATGAACGGCAATGAAAATCTATCTTTACCTAGTGGAAAAAAGATTCAAGACTTAATCACG
ACCTTAGAAGCGTGCTATCAGTGGGCAATTAAAACGGACTTCACTAAACCTGAAAATAATTATTGGTTTTGGTATCGCTC
ACAAGATAAAGAAGAACCGCGTCTTGGGGTTCGAGGTGAAGAGAAAGGCGAAGACAGAGAATTGCCTCTTGATATTGGCC
GTCAAGTGTATCGTCTTTATCACGCATTATTGAAATGTGAGGCATCAATGTCTTTAGCAGAGTTCTTAGTGGAGCATCCT
CAATATCGCGCAATAAGCCGCAGAGTATGGACATTAGGACATAAAGCGTTAGGTGATATTCAAATGAATGTACTACATAA
GTCGTCTTTACCAATGCATTTATTACGTTGTAAATTAGCCGTCTTTGGTGCAACGAAGTTTGATCCACGATCCGATCGCT
GGGTTCGAGTTACTTTTTTTCAAGGCGCGCCTTTGTTAGATGAAGTTCATGATGGGGAATGGTTATTCCCGTTATTGCCA
AATGCAGGAGAAGGCCAATGA

Upstream 100 bases:

>100_bases
CAATAACGTGAAGCAAGAGCGGTGTTTGCCGCTCAACTTGGCTCTAATAATGAACTAAATTCTAATAAAAGAGCCCCTAT
CAATACACCTATAATTAGAA

Downstream 100 bases:

>100_bases
TCGTGTCACACAATGAATTAGTAGCGGTAACTAATAAGGCATTCTTAGGCATGCGCCGAACGTGCGGAGAAGCCGATGTT
ATTGCCAATATGGTGGCAGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 566; Mature: 566

Protein sequence:

>566_residues
MVVSNMDAHRSTYAETHLRKPEIVMAPERLGAMHQNRISFVRSLIRKMAQQEWQVTKYEWQLSPQGFGHVIYKLVTPNDT
YHLVVFCDEIADEERNDRVIAEKWDVTFALVLGEVNVDLLSQLRANVPLQEAGRNSNNVLVLARANKSVRVFDHLVSHLS
RGEQPNQKELAEVGYILRTTAVYGNGKFGIADFKLLENNADFNQSFSAQMCAVYLLRQFSLDWVHYLATEQGGVNAVTLD
RELQRYLGVGNATGLGMAPYLINHPCIVDQWMFAREMALSAVLNAPVIRERKEPLQTLLRKGVRHLQQVITINEHQDALN
HRAVSELNELIASLDNIVAKSSTWEDVVTHSNGMSLEAQEMLLSCLMEIYPELVDRFEEQMNGNENLSLPSGKKIQDLIT
TLEACYQWAIKTDFTKPENNYWFWYRSQDKEEPRLGVRGEEKGEDRELPLDIGRQVYRLYHALLKCEASMSLAEFLVEHP
QYRAISRRVWTLGHKALGDIQMNVLHKSSLPMHLLRCKLAVFGATKFDPRSDRWVRVTFFQGAPLLDEVHDGEWLFPLLP
NAGEGQ

Sequences:

>Translated_566_residues
MVVSNMDAHRSTYAETHLRKPEIVMAPERLGAMHQNRISFVRSLIRKMAQQEWQVTKYEWQLSPQGFGHVIYKLVTPNDT
YHLVVFCDEIADEERNDRVIAEKWDVTFALVLGEVNVDLLSQLRANVPLQEAGRNSNNVLVLARANKSVRVFDHLVSHLS
RGEQPNQKELAEVGYILRTTAVYGNGKFGIADFKLLENNADFNQSFSAQMCAVYLLRQFSLDWVHYLATEQGGVNAVTLD
RELQRYLGVGNATGLGMAPYLINHPCIVDQWMFAREMALSAVLNAPVIRERKEPLQTLLRKGVRHLQQVITINEHQDALN
HRAVSELNELIASLDNIVAKSSTWEDVVTHSNGMSLEAQEMLLSCLMEIYPELVDRFEEQMNGNENLSLPSGKKIQDLIT
TLEACYQWAIKTDFTKPENNYWFWYRSQDKEEPRLGVRGEEKGEDRELPLDIGRQVYRLYHALLKCEASMSLAEFLVEHP
QYRAISRRVWTLGHKALGDIQMNVLHKSSLPMHLLRCKLAVFGATKFDPRSDRWVRVTFFQGAPLLDEVHDGEWLFPLLP
NAGEGQ
>Mature_566_residues
MVVSNMDAHRSTYAETHLRKPEIVMAPERLGAMHQNRISFVRSLIRKMAQQEWQVTKYEWQLSPQGFGHVIYKLVTPNDT
YHLVVFCDEIADEERNDRVIAEKWDVTFALVLGEVNVDLLSQLRANVPLQEAGRNSNNVLVLARANKSVRVFDHLVSHLS
RGEQPNQKELAEVGYILRTTAVYGNGKFGIADFKLLENNADFNQSFSAQMCAVYLLRQFSLDWVHYLATEQGGVNAVTLD
RELQRYLGVGNATGLGMAPYLINHPCIVDQWMFAREMALSAVLNAPVIRERKEPLQTLLRKGVRHLQQVITINEHQDALN
HRAVSELNELIASLDNIVAKSSTWEDVVTHSNGMSLEAQEMLLSCLMEIYPELVDRFEEQMNGNENLSLPSGKKIQDLIT
TLEACYQWAIKTDFTKPENNYWFWYRSQDKEEPRLGVRGEEKGEDRELPLDIGRQVYRLYHALLKCEASMSLAEFLVEHP
QYRAISRRVWTLGHKALGDIQMNVLHKSSLPMHLLRCKLAVFGATKFDPRSDRWVRVTFFQGAPLLDEVHDGEWLFPLLP
NAGEGQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 64798; Mature: 64798

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVSNMDAHRSTYAETHLRKPEIVMAPERLGAMHQNRISFVRSLIRKMAQQEWQVTKYEW
CCCCCCCHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
QLSPQGFGHVIYKLVTPNDTYHLVVFCDEIADEERNDRVIAEKWDVTFALVLGEVNVDLL
EECCCCCCEEEEEEECCCCCEEEEEEECHHCCCCCCCCEEEEECCEEEEEEECCCCHHHH
SQLRANVPLQEAGRNSNNVLVLARANKSVRVFDHLVSHLSRGEQPNQKELAEVGYILRTT
HHHHHCCCHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHE
AVYGNGKFGIADFKLLENNADFNQSFSAQMCAVYLLRQFSLDWVHYLATEQGGVNAVTLD
EEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCEEEEHH
RELQRYLGVGNATGLGMAPYLINHPCIVDQWMFAREMALSAVLNAPVIRERKEPLQTLLR
HHHHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
KGVRHLQQVITINEHQDALNHRAVSELNELIASLDNIVAKSSTWEDVVTHSNGMSLEAQE
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHH
MLLSCLMEIYPELVDRFEEQMNGNENLSLPSGKKIQDLITTLEACYQWAIKTDFTKPENN
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
YWFWYRSQDKEEPRLGVRGEEKGEDRELPLDIGRQVYRLYHALLKCEASMSLAEFLVEHP
EEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QYRAISRRVWTLGHKALGDIQMNVLHKSSLPMHLLRCKLAVFGATKFDPRSDRWVRVTFF
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEE
QGAPLLDEVHDGEWLFPLLPNAGEGQ
CCCCCHHHCCCCCEEEEECCCCCCCC
>Mature Secondary Structure
MVVSNMDAHRSTYAETHLRKPEIVMAPERLGAMHQNRISFVRSLIRKMAQQEWQVTKYEW
CCCCCCCHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
QLSPQGFGHVIYKLVTPNDTYHLVVFCDEIADEERNDRVIAEKWDVTFALVLGEVNVDLL
EECCCCCCEEEEEEECCCCCEEEEEEECHHCCCCCCCCEEEEECCEEEEEEECCCCHHHH
SQLRANVPLQEAGRNSNNVLVLARANKSVRVFDHLVSHLSRGEQPNQKELAEVGYILRTT
HHHHHCCCHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHE
AVYGNGKFGIADFKLLENNADFNQSFSAQMCAVYLLRQFSLDWVHYLATEQGGVNAVTLD
EEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCEEEEHH
RELQRYLGVGNATGLGMAPYLINHPCIVDQWMFAREMALSAVLNAPVIRERKEPLQTLLR
HHHHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
KGVRHLQQVITINEHQDALNHRAVSELNELIASLDNIVAKSSTWEDVVTHSNGMSLEAQE
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHH
MLLSCLMEIYPELVDRFEEQMNGNENLSLPSGKKIQDLITTLEACYQWAIKTDFTKPENN
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
YWFWYRSQDKEEPRLGVRGEEKGEDRELPLDIGRQVYRLYHALLKCEASMSLAEFLVEHP
EEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QYRAISRRVWTLGHKALGDIQMNVLHKSSLPMHLLRCKLAVFGATKFDPRSDRWVRVTFF
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEE
QGAPLLDEVHDGEWLFPLLPNAGEGQ
CCCCCHHHCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA