| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694449
Identifier: 209694449
GI number: 209694449
Start: 974411
End: 975142
Strand: Reverse
Name: 209694449
Synonym: VSAL_I0873
Alternate gene names: NA
Gene position: 975142-974411 (Counterclockwise)
Preceding gene: 209694450
Following gene: 209694448
Centisome position: 29.33
GC content: 42.21
Gene sequence:
>732_bases ATGATCGTGTCACACAATGAATTAGTAGCGGTAACTAATAAGGCATTCTTAGGCATGCGCCGAACGTGCGGAGAAGCCGA TGTTATTGCCAATATGGTGGCAGATCTGCAAATGGTTGGGTTGAATGGCGTCAGACATTTTAATAATTCGACCAAATTTT TAACGGTTGAGGAGGATTGTCCTGTCGAAATAACCATGAGCAAATCAGGTAATTTAGTGGTGGATTTACACGGTTGCAGT GTGGCTTGCCATTTACCTGTGATTGTTGATTACGCGGTTGAAAAAATGGTGAAACGTAAACGCTTAAGCATCACATTAAC CAAATGTCATAACCGTTGGCTCGCCTACAGTGAGTTGGTGAAGTTGGCAGCAAAAGGCATCGCTTGTAAAGCCGAGTGGG AAAATGGCACTAGCCCTAAACGGACCTTGTATGTTTTAAATCGAGGGTGTGTATCACCTGAATTGTTTTTGTCAGATGAC GTTGAGCTCAACAGTGGAAAATTAAATGACATGACCATTGAATTATCAGTACGAGATTTTGATGTGGTTGCTTTATCTGA AGGGTACAGCATTCATATTAATTCGGCTGAGCTGAATGGATCACAAGAAAATGCATGGAGTCATGGCATTCAGGTTGATG ATGCTGATTGGGAAAGTTTGAAAAAAACAGCGACCGCTATTTTAGTCGAAAACAGTGAGCAATCGTTAAAAGGTGCGGGA GAGCTAGCCTGA
Upstream 100 bases:
>100_bases GCTGGGTTCGAGTTACTTTTTTTCAAGGCGCGCCTTTGTTAGATGAAGTTCATGATGGGGAATGGTTATTCCCGTTATTG CCAAATGCAGGAGAAGGCCA
Downstream 100 bases:
>100_bases AACCATACATAGTTAACGATTAAGATGACAACGCTCATGGTGAAAACGATGGGCGTTTTTTATACTATTGACTCAGTAGT AAAATGAATGCAAAGTACTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 243; Mature: 243
Protein sequence:
>243_residues MIVSHNELVAVTNKAFLGMRRTCGEADVIANMVADLQMVGLNGVRHFNNSTKFLTVEEDCPVEITMSKSGNLVVDLHGCS VACHLPVIVDYAVEKMVKRKRLSITLTKCHNRWLAYSELVKLAAKGIACKAEWENGTSPKRTLYVLNRGCVSPELFLSDD VELNSGKLNDMTIELSVRDFDVVALSEGYSIHINSAELNGSQENAWSHGIQVDDADWESLKKTATAILVENSEQSLKGAG ELA
Sequences:
>Translated_243_residues MIVSHNELVAVTNKAFLGMRRTCGEADVIANMVADLQMVGLNGVRHFNNSTKFLTVEEDCPVEITMSKSGNLVVDLHGCS VACHLPVIVDYAVEKMVKRKRLSITLTKCHNRWLAYSELVKLAAKGIACKAEWENGTSPKRTLYVLNRGCVSPELFLSDD VELNSGKLNDMTIELSVRDFDVVALSEGYSIHINSAELNGSQENAWSHGIQVDDADWESLKKTATAILVENSEQSLKGAG ELA >Mature_243_residues MIVSHNELVAVTNKAFLGMRRTCGEADVIANMVADLQMVGLNGVRHFNNSTKFLTVEEDCPVEITMSKSGNLVVDLHGCS VACHLPVIVDYAVEKMVKRKRLSITLTKCHNRWLAYSELVKLAAKGIACKAEWENGTSPKRTLYVLNRGCVSPELFLSDD VELNSGKLNDMTIELSVRDFDVVALSEGYSIHINSAELNGSQENAWSHGIQVDDADWESLKKTATAILVENSEQSLKGAG ELA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26654; Mature: 26654
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIVSHNELVAVTNKAFLGMRRTCGEADVIANMVADLQMVGLNGVRHFNNSTKFLTVEEDC CEECCCCEEEEECHHHHHHHHCCCHHHHHHHHHHHEEEECCCCEEECCCCCEEEEECCCC PVEITMSKSGNLVVDLHGCSVACHLPVIVDYAVEKMVKRKRLSITLTKCHNRWLAYSELV CEEEEECCCCCEEEEEECCEEEEECHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHH KLAAKGIACKAEWENGTSPKRTLYVLNRGCVSPELFLSDDVELNSGKLNDMTIELSVRDF HHHHCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCEECCCCCEEEEEEEEEEEE DVVALSEGYSIHINSAELNGSQENAWSHGIQVDDADWESLKKTATAILVENSEQSLKGAG EEEEECCCCEEEEECCCCCCCCCCHHHCCEEECCCCHHHHHHHEEEEEEECCHHHHCCCC ELA CCC >Mature Secondary Structure MIVSHNELVAVTNKAFLGMRRTCGEADVIANMVADLQMVGLNGVRHFNNSTKFLTVEEDC CEECCCCEEEEECHHHHHHHHCCCHHHHHHHHHHHEEEECCCCEEECCCCCEEEEECCCC PVEITMSKSGNLVVDLHGCSVACHLPVIVDYAVEKMVKRKRLSITLTKCHNRWLAYSELV CEEEEECCCCCEEEEEECCEEEEECHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHH KLAAKGIACKAEWENGTSPKRTLYVLNRGCVSPELFLSDDVELNSGKLNDMTIELSVRDF HHHHCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCEECCCCCEEEEEEEEEEEE DVVALSEGYSIHINSAELNGSQENAWSHGIQVDDADWESLKKTATAILVENSEQSLKGAG EEEEECCCCEEEEECCCCCCCCCCHHHCCEEECCCCHHHHHHHEEEEEEECCHHHHCCCC ELA CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA