Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

Click here to switch to the map view.

The map label for this gene is 209693818

Identifier: 209693818

GI number: 209693818

Start: 246879

End: 247619

Strand: Direct

Name: 209693818

Synonym: VSAL_I0205

Alternate gene names: NA

Gene position: 246879-247619 (Clockwise)

Preceding gene: 209693815

Following gene: 209693821

Centisome position: 7.42

GC content: 39.41

Gene sequence:

>741_bases
ATGTTAGTCGGATATAAACGTGCACAGTGTAAGAAGGTTCTTGTCATCAACCGTAAAGGTGGTGCAGGCAAATCAACCTT
TGCAATTGCAATGGCGTCTTTCTACGCTCATCAAAACGTAAAGACTGAAATCATCGATCTTGATCCACAAGGAACCAGTT
ATTTTTGGGGAAATAAAAGCGAGGGTGTAAGAACGACTAAATTTTTACCCTCTTCTAACGTGCCTTTCTCTCTCGCATTA
CGATTAGAAGCCGACACCAAAATTACGGTGATTGATTCTCCCTCTAATTTCAGTCAATTTGAAATGGAGAAATATATCTC
GATGGTGGATAAAATTGTTTTTCCCGTTCAACCCTCACCGATTGATGTTCACTCTATGTTGGGGTTTATTAAGGATTTAA
TTAAGTCTCCCGCCTTTAAAAATAACAGAGTTGAATTAGCGTTTGTTATTACTCGCTGCAAAGAAAACAAGCAAGGCACT
GAGTTTATTCATAAAGTGCTGCAACACATGAAATACCCGCTATTAGGTAGTATGTCTGAGAGTCAGGCATATCAGAATAT
GTTTTCTGAAAAGAACAGTTTTTTGATTAGCCATCCAGAATTAGATAAAGAACTTTGGCAGAGGATGAAGCTGTGGCTTG
ATGTCGATATGACGCCACCACAAACACTCGCCCCAGAAACAACAAAAGTGGCTGAGCCGAAGCCAACCACTTATCGTTCT
TTACTTAAAAGACGCTATTAA

Upstream 100 bases:

>100_bases
CTGCAAATTTTAAGTATAGAATGCAGTACTACTGGTTATTTACATGGCATATTGATTGCTTAGTTAATAGCTTTTCAATA
AGTATTGCGGATTCATTTCT

Downstream 100 bases:

>100_bases
CCACTTGTTTATGCATTAAGCTATTTGGAATTAAATACCAAATTCTGCACGGTAGGCTTTTACTGACTCAAGTTGCTCAG
CATTGCCGCCTTTCTCTTCT

Product: partitioning protein ParA

Products: NA

Alternate protein names: Cobyrinic Acid A C-Diamide Synthase; Partition-Related Protein; Partition Protein; ParA Family Protein; Chromosome Partitioning Protein ParA; CobQ/CobB/MinD/ParA Domain-Containing Protein; Partitioning Protein ParA; Chromosome Partitioning-Related ATPase; Partition Protein ParA; Partition-Like Protein

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MLVGYKRAQCKKVLVINRKGGAGKSTFAIAMASFYAHQNVKTEIIDLDPQGTSYFWGNKSEGVRTTKFLPSSNVPFSLAL
RLEADTKITVIDSPSNFSQFEMEKYISMVDKIVFPVQPSPIDVHSMLGFIKDLIKSPAFKNNRVELAFVITRCKENKQGT
EFIHKVLQHMKYPLLGSMSESQAYQNMFSEKNSFLISHPELDKELWQRMKLWLDVDMTPPQTLAPETTKVAEPKPTTYRS
LLKRRY

Sequences:

>Translated_246_residues
MLVGYKRAQCKKVLVINRKGGAGKSTFAIAMASFYAHQNVKTEIIDLDPQGTSYFWGNKSEGVRTTKFLPSSNVPFSLAL
RLEADTKITVIDSPSNFSQFEMEKYISMVDKIVFPVQPSPIDVHSMLGFIKDLIKSPAFKNNRVELAFVITRCKENKQGT
EFIHKVLQHMKYPLLGSMSESQAYQNMFSEKNSFLISHPELDKELWQRMKLWLDVDMTPPQTLAPETTKVAEPKPTTYRS
LLKRRY
>Mature_246_residues
MLVGYKRAQCKKVLVINRKGGAGKSTFAIAMASFYAHQNVKTEIIDLDPQGTSYFWGNKSEGVRTTKFLPSSNVPFSLAL
RLEADTKITVIDSPSNFSQFEMEKYISMVDKIVFPVQPSPIDVHSMLGFIKDLIKSPAFKNNRVELAFVITRCKENKQGT
EFIHKVLQHMKYPLLGSMSESQAYQNMFSEKNSFLISHPELDKELWQRMKLWLDVDMTPPQTLAPETTKVAEPKPTTYRS
LLKRRY

Specific function: Unknown

COG id: COG1192

COG function: function code D; ATPases involved in chromosome partitioning

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28137; Mature: 28137

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVGYKRAQCKKVLVINRKGGAGKSTFAIAMASFYAHQNVKTEIIDLDPQGTSYFWGNKS
CCCCCCHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCC
EGVRTTKFLPSSNVPFSLALRLEADTKITVIDSPSNFSQFEMEKYISMVDKIVFPVQPSP
CCCEEEEECCCCCCCEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCC
IDVHSMLGFIKDLIKSPAFKNNRVELAFVITRCKENKQGTEFIHKVLQHMKYPLLGSMSE
CCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEHHCCCCCHHHHHHHHHHHCCCCCCCCCHH
SQAYQNMFSEKNSFLISHPELDKELWQRMKLWLDVDMTPPQTLAPETTKVAEPKPTTYRS
HHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCHHHHH
LLKRRY
HHHHCC
>Mature Secondary Structure
MLVGYKRAQCKKVLVINRKGGAGKSTFAIAMASFYAHQNVKTEIIDLDPQGTSYFWGNKS
CCCCCCHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCC
EGVRTTKFLPSSNVPFSLALRLEADTKITVIDSPSNFSQFEMEKYISMVDKIVFPVQPSP
CCCEEEEECCCCCCCEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCC
IDVHSMLGFIKDLIKSPAFKNNRVELAFVITRCKENKQGTEFIHKVLQHMKYPLLGSMSE
CCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEHHCCCCCHHHHHHHHHHHCCCCCCCCCHH
SQAYQNMFSEKNSFLISHPELDKELWQRMKLWLDVDMTPPQTLAPETTKVAEPKPTTYRS
HHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCHHHHH
LLKRRY
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA