Click here to switch to the map view.

The map label for this gene is 209693700

Identifier: 209693700

GI number: 209693700

Start: 79281

End: 80342

Strand: Direct

Name: 209693700

Synonym: VSAL_I0076

Alternate gene names: NA

Gene position: 79281-80342 (Clockwise)

Preceding gene: 209693693

Following gene: 209693701

Centisome position: 2.38

GC content: 37.85

Gene sequence:

>1062_bases
ATGTTTAAAAAAATGCTGATATTAACCTCACTATTCACCACTATAACGCTATCTCCACTGTCTTTTTCTAACGAAGATAA
GTTGATGTTAAAAAAGGATTACCCTGACACGTATACCGTAGAAAAAGGGGATACGTTATGGGATATATCCGCTCTCTTTC
TTGATAACCCTTGGTTTTGGCCAAAGCTATGGAAAATTAACCCTGATATCAATAATCCTCATTTAATTTATCCCGGAGAT
AAGTTGAGCTTAAGTTGGCATAACGGAAACCCTGTTTTAAGTCTTAAGCCGTTGCAAAAATTATCACCCAAAACTCGGAT
CATAGAAAAAGAAGCGGTTCCGACGTTAGCGCCGAGTTTAGTTGTTCCCTATTTAAAATCAGATCGTTTAATTGATGATG
TTAATTATCGAGCGGCTTATCGAGTGTTGGGTACGAGTGACGGACGTAAGTTTCTTAGTTCAAATGAGCGAGTCTATGTT
GATGGTGAACTTTCACATAAGGAATGGGGTATTTATCGCGTAATTAATGAATTTAAACGTAGAGATAATAAAGAAAAAGC
GTACGCACTGAAATCGATAGGTACTGCAGAATTGGTAGACAGCACGGAAGAATTTAGTGGATTGAGAGTCCTTAAACAAC
AACAAGAAATCACGATAAATGACATTGTTTTACCGTTAGACGGTAAGAGTAACTTATCACTAACCACTACGTTTTATCCG
TTGCCCGCACCAACAAATAGTAAGGCTTCATTATTGGGTTCTATTGATGGCGGAGACTATTTGGCGGTTAATCAAGTGGC
GGTGATAGATAAAGGGACAAATGACGGGTTACAACAAGGAAGTATGTTCGCATTAAAAGAAAAAGGGTACGCAGTAAAAG
GAGATAAAGGTGAATATCATTATGATGACGAAAACAATAAAAAGAGTATTCAGTTACCAGAAACGGTGGTTGGAGAGCTG
ATAGTGATTCGTCCTTATGAATCATTTAGTTTAGCGTTAATAACTCGCAGTGAAACGCCTATTCATAAGCGAATGATTGT
GACCTCACCACAGACAAAATAG

Upstream 100 bases:

>100_bases
AACTGCGCCGAAAACGGCATAAACCTAATAGCTCCAATTCTAGACATTTTATTAAGCAAATGACAGCATCGGTTCGAATG
TCTGACAAGGAAAGCGGATC

Downstream 100 bases:

>100_bases
AGGGATTGATGTTTAACTCAGATAAACACTTATCTGCATGGTTAACTCTGTGCTTTTGTCCTCGAATTGGTGGGAAGGTA
ATGTCTCGCCTACTTGCCAT

Product: cell wall degradation enzyme

Products: NA

Alternate protein names: LysM Domain Protein; Cell Wall Degradation; LysM Motif-Containing Protein; Protein Containing LysM Domain; Signal Peptide Protein; LysM Family Cell Wall Degradation Protein; Lysin Domain-Containing Protein; Lysm Domain Protein; Signal Peptide Protein LysM Domain Protein; Secreted Protein

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MFKKMLILTSLFTTITLSPLSFSNEDKLMLKKDYPDTYTVEKGDTLWDISALFLDNPWFWPKLWKINPDINNPHLIYPGD
KLSLSWHNGNPVLSLKPLQKLSPKTRIIEKEAVPTLAPSLVVPYLKSDRLIDDVNYRAAYRVLGTSDGRKFLSSNERVYV
DGELSHKEWGIYRVINEFKRRDNKEKAYALKSIGTAELVDSTEEFSGLRVLKQQQEITINDIVLPLDGKSNLSLTTTFYP
LPAPTNSKASLLGSIDGGDYLAVNQVAVIDKGTNDGLQQGSMFALKEKGYAVKGDKGEYHYDDENNKKSIQLPETVVGEL
IVIRPYESFSLALITRSETPIHKRMIVTSPQTK

Sequences:

>Translated_353_residues
MFKKMLILTSLFTTITLSPLSFSNEDKLMLKKDYPDTYTVEKGDTLWDISALFLDNPWFWPKLWKINPDINNPHLIYPGD
KLSLSWHNGNPVLSLKPLQKLSPKTRIIEKEAVPTLAPSLVVPYLKSDRLIDDVNYRAAYRVLGTSDGRKFLSSNERVYV
DGELSHKEWGIYRVINEFKRRDNKEKAYALKSIGTAELVDSTEEFSGLRVLKQQQEITINDIVLPLDGKSNLSLTTTFYP
LPAPTNSKASLLGSIDGGDYLAVNQVAVIDKGTNDGLQQGSMFALKEKGYAVKGDKGEYHYDDENNKKSIQLPETVVGEL
IVIRPYESFSLALITRSETPIHKRMIVTSPQTK
>Mature_353_residues
MFKKMLILTSLFTTITLSPLSFSNEDKLMLKKDYPDTYTVEKGDTLWDISALFLDNPWFWPKLWKINPDINNPHLIYPGD
KLSLSWHNGNPVLSLKPLQKLSPKTRIIEKEAVPTLAPSLVVPYLKSDRLIDDVNYRAAYRVLGTSDGRKFLSSNERVYV
DGELSHKEWGIYRVINEFKRRDNKEKAYALKSIGTAELVDSTEEFSGLRVLKQQQEITINDIVLPLDGKSNLSLTTTFYP
LPAPTNSKASLLGSIDGGDYLAVNQVAVIDKGTNDGLQQGSMFALKEKGYAVKGDKGEYHYDDENNKKSIQLPETVVGEL
IVIRPYESFSLALITRSETPIHKRMIVTSPQTK

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39875; Mature: 39875

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKKMLILTSLFTTITLSPLSFSNEDKLMLKKDYPDTYTVEKGDTLWDISALFLDNPWFW
CCHHHHHHHHHHHHEEECCCCCCCCCCEEEEECCCCCEEEECCCCEEEEEEEEECCCCCC
PKLWKINPDINNPHLIYPGDKLSLSWHNGNPVLSLKPLQKLSPKTRIIEKEAVPTLAPSL
CEEEEECCCCCCCEEEECCCEEEEEEECCCEEEEECCHHHCCCHHEEEEHHCCCCCCCHH
VVPYLKSDRLIDDVNYRAAYRVLGTSDGRKFLSSNERVYVDGELSHKEWGIYRVINEFKR
HCCCCCCCCEEECCCCEEEEEEEECCCCHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHH
RDNKEKAYALKSIGTAELVDSTEEFSGLRVLKQQQEITINDIVLPLDGKSNLSLTTTFYP
CCCHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCEEEEEEEEE
LPAPTNSKASLLGSIDGGDYLAVNQVAVIDKGTNDGLQQGSMFALKEKGYAVKGDKGEYH
CCCCCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEECCCCCEE
YDDENNKKSIQLPETVVGELIVIRPYESFSLALITRSETPIHKRMIVTSPQTK
ECCCCCCCEEECCHHHHCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCC
>Mature Secondary Structure
MFKKMLILTSLFTTITLSPLSFSNEDKLMLKKDYPDTYTVEKGDTLWDISALFLDNPWFW
CCHHHHHHHHHHHHEEECCCCCCCCCCEEEEECCCCCEEEECCCCEEEEEEEEECCCCCC
PKLWKINPDINNPHLIYPGDKLSLSWHNGNPVLSLKPLQKLSPKTRIIEKEAVPTLAPSL
CEEEEECCCCCCCEEEECCCEEEEEEECCCEEEEECCHHHCCCHHEEEEHHCCCCCCCHH
VVPYLKSDRLIDDVNYRAAYRVLGTSDGRKFLSSNERVYVDGELSHKEWGIYRVINEFKR
HCCCCCCCCEEECCCCEEEEEEEECCCCHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHH
RDNKEKAYALKSIGTAELVDSTEEFSGLRVLKQQQEITINDIVLPLDGKSNLSLTTTFYP
CCCHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCEEEEEEEEE
LPAPTNSKASLLGSIDGGDYLAVNQVAVIDKGTNDGLQQGSMFALKEKGYAVKGDKGEYH
CCCCCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEECCCCCEE
YDDENNKKSIQLPETVVGELIVIRPYESFSLALITRSETPIHKRMIVTSPQTK
ECCCCCCCEEECCHHHHCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA