| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209693693
Identifier: 209693693
GI number: 209693693
Start: 69494
End: 69790
Strand: Direct
Name: 209693693
Synonym: VSAL_I0066
Alternate gene names: NA
Gene position: 69494-69790 (Clockwise)
Preceding gene: 209693692
Following gene: 209693700
Centisome position: 2.09
GC content: 37.37
Gene sequence:
>297_bases ATGAATAAAAAATTATCCCATAAAAGTAATGAGCTTGTTTTACTTCGAGCGTTATTTGCAGAAAAAGAAGCTCAAAATAA TGAACTTCAACTCACCGTTGATAAACTTAATGACGCTTTGAAAGAAAGTGAAGCTCGTTATCAATCTCTTTTGGAAAAAA TGCAGCTTGCTCGTCACCGACAATTTGGCGCGAGCAGTGAATCTTTACCTAAGGAAGATTGTGTTTTCAATGAAGCTGAA GAAGTAAGCTCAGACACCCTATTGATGCGGATTCTCTTGAGCATCAAGGAGCACTAA
Upstream 100 bases:
>100_bases TATTCACTATCAAAGTCTAAATTAAGGAGTAGATATTGCTTCGTAAATGGCAATAAACTAAGAGCGCCAAACGTATTATG CTGATATTTTTGTTCACACT
Downstream 100 bases:
>100_bases CGAGTGTTGGTGAGTTGCAGCTCAACACGAATGCATTAGATATTCAAAGCAATATAGAAACGCAAGGTAATCTCAATATA TCGGCATCATCCGTCACCAA
Product: transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 98; Mature: 98
Protein sequence:
>98_residues MNKKLSHKSNELVLLRALFAEKEAQNNELQLTVDKLNDALKESEARYQSLLEKMQLARHRQFGASSESLPKEDCVFNEAE EVSSDTLLMRILLSIKEH
Sequences:
>Translated_98_residues MNKKLSHKSNELVLLRALFAEKEAQNNELQLTVDKLNDALKESEARYQSLLEKMQLARHRQFGASSESLPKEDCVFNEAE EVSSDTLLMRILLSIKEH >Mature_98_residues MNKKLSHKSNELVLLRALFAEKEAQNNELQLTVDKLNDALKESEARYQSLLEKMQLARHRQFGASSESLPKEDCVFNEAE EVSSDTLLMRILLSIKEH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11272; Mature: 11272
Theoretical pI: Translated: 5.69; Mature: 5.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKLSHKSNELVLLRALFAEKEAQNNELQLTVDKLNDALKESEARYQSLLEKMQLARHR CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH QFGASSESLPKEDCVFNEAEEVSSDTLLMRILLSIKEH HCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNKKLSHKSNELVLLRALFAEKEAQNNELQLTVDKLNDALKESEARYQSLLEKMQLARHR CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH QFGASSESLPKEDCVFNEAEEVSSDTLLMRILLSIKEH HCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA