| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209693689
Identifier: 209693689
GI number: 209693689
Start: 64200
End: 64604
Strand: Direct
Name: 209693689
Synonym: VSAL_I0060
Alternate gene names: NA
Gene position: 64200-64604 (Clockwise)
Preceding gene: 209693688
Following gene: 209693690
Centisome position: 1.93
GC content: 41.98
Gene sequence:
>405_bases ATGTCCACTAATAAAAAGAAGTTGTCTCGAGTGGTGAATACTAATCGAGCCAGCCTAATTAAGTTGTACTCATTGCATTT TGAAGACAGTGCCACTCAAGCCATTGAACAAATAACCATTAGAGCGATTAATCGGACCTATGTTGCTTATAGGCCCCCAC CCCCTGGTGAAGTAATGAAAGCTTGGGTTATTGAAAATCGCGCGCCCCAATGGGCTTGTAGGGCTACCTTTGACCTGTTG ATTGAGCTTGATTGGTTGCCAAATACTGATATTGAAAAAGCTATTGCGGCTCGCTTTCTTTTTTTGAATGACTACCCAAT CACTGAAAGTTGGAAAGCGTTATTAGGCGAGTGGTTAGAACTTGCCAAGCAAGCACAAAATGAGAACTCGGATGAATACG AATAA
Upstream 100 bases:
>100_bases GCCGAAAGTGGCAAAATAGTGATTGTGCTTGACGCTAGTTCAGGCAAATTGACCGTTCCTGCCTGCGAAGTTTCAGTGAT TGGGTATCACTCGTTAGAGC
Downstream 100 bases:
>100_bases CTACAATGAAACTCTTAAAGATGAATACCGCACATCAGTTTTGGCGTTTTTTAATACCGTAGAAGAGCAACGCGAAGACC GCGAACTTAGCGCACGGATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 134; Mature: 133
Protein sequence:
>134_residues MSTNKKKLSRVVNTNRASLIKLYSLHFEDSATQAIEQITIRAINRTYVAYRPPPPGEVMKAWVIENRAPQWACRATFDLL IELDWLPNTDIEKAIAARFLFLNDYPITESWKALLGEWLELAKQAQNENSDEYE
Sequences:
>Translated_134_residues MSTNKKKLSRVVNTNRASLIKLYSLHFEDSATQAIEQITIRAINRTYVAYRPPPPGEVMKAWVIENRAPQWACRATFDLL IELDWLPNTDIEKAIAARFLFLNDYPITESWKALLGEWLELAKQAQNENSDEYE >Mature_133_residues STNKKKLSRVVNTNRASLIKLYSLHFEDSATQAIEQITIRAINRTYVAYRPPPPGEVMKAWVIENRAPQWACRATFDLLI ELDWLPNTDIEKAIAARFLFLNDYPITESWKALLGEWLELAKQAQNENSDEYE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15529; Mature: 15398
Theoretical pI: Translated: 5.26; Mature: 5.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTNKKKLSRVVNTNRASLIKLYSLHFEDSATQAIEQITIRAINRTYVAYRPPPPGEVMK CCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHH AWVIENRAPQWACRATFDLLIELDWLPNTDIEKAIAARFLFLNDYPITESWKALLGEWLE HHHHCCCCCCHHHHHHEEHEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH LAKQAQNENSDEYE HHHHHCCCCCCCCC >Mature Secondary Structure STNKKKLSRVVNTNRASLIKLYSLHFEDSATQAIEQITIRAINRTYVAYRPPPPGEVMK CCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHH AWVIENRAPQWACRATFDLLIELDWLPNTDIEKAIAARFLFLNDYPITESWKALLGEWLE HHHHCCCCCCHHHHHHEEHEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH LAKQAQNENSDEYE HHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA