| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209693666
Identifier: 209693666
GI number: 209693666
Start: 35944
End: 36303
Strand: Reverse
Name: 209693666
Synonym: VSAL_I0033
Alternate gene names: NA
Gene position: 36303-35944 (Counterclockwise)
Preceding gene: 209693667
Following gene: 209693662
Centisome position: 1.09
GC content: 32.22
Gene sequence:
>360_bases ATGGATAAGTTATTTAAAGTAGTAAGCAATGGAATTTATGAAATTGTAGATAACGCATGTAATCACAATACAATAGCAAC ACCTTTAAGTCAGAAGGCATTTTCCCCCCTCGCTTACATGAGTGAAATGATGGTACCAAATGATATGCCAATGAAAATGC ATGATTTCGCAGCTCGATGTATTAACTTAATAGGATTGAGTTGCCAAATAATGAATACTCACCAATCTAATTTCAAAACC ACAGATACATACTTAATATGTAAATCATTTATCTCTAATGTTTGCGATGAATTAGAAATGCCTAGTAATTCCTACCAAAG ACAGTACTGGCTAGAGCAAATTGATAACAAATTACTTTAA
Upstream 100 bases:
>100_bases AAGCATGTTAGAAATAGACTAAAAATGGTTCTAATTTAGCAACCTTTCTGATTATCTGAGATCGAGCATTATTTAAACAA CCAATTATAGAGAAAATACG
Downstream 100 bases:
>100_bases TATCAATTTATAATAAAGTTAGATGTAATTTCTTCTCGATAGTGACATTAGGGTATGCTTAGTTTTCGTGATATTTGAAT TAAAATGTTGATCACGAGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 119; Mature: 119
Protein sequence:
>119_residues MDKLFKVVSNGIYEIVDNACNHNTIATPLSQKAFSPLAYMSEMMVPNDMPMKMHDFAARCINLIGLSCQIMNTHQSNFKT TDTYLICKSFISNVCDELEMPSNSYQRQYWLEQIDNKLL
Sequences:
>Translated_119_residues MDKLFKVVSNGIYEIVDNACNHNTIATPLSQKAFSPLAYMSEMMVPNDMPMKMHDFAARCINLIGLSCQIMNTHQSNFKT TDTYLICKSFISNVCDELEMPSNSYQRQYWLEQIDNKLL >Mature_119_residues MDKLFKVVSNGIYEIVDNACNHNTIATPLSQKAFSPLAYMSEMMVPNDMPMKMHDFAARCINLIGLSCQIMNTHQSNFKT TDTYLICKSFISNVCDELEMPSNSYQRQYWLEQIDNKLL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13698; Mature: 13698
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.2 %Cys (Translated Protein) 7.6 %Met (Translated Protein) 11.8 %Cys+Met (Translated Protein) 4.2 %Cys (Mature Protein) 7.6 %Met (Mature Protein) 11.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKLFKVVSNGIYEIVDNACNHNTIATPLSQKAFSPLAYMSEMMVPNDMPMKMHDFAARC CHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHH INLIGLSCQIMNTHQSNFKTTDTYLICKSFISNVCDELEMPSNSYQRQYWLEQIDNKLL HHHHCCHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MDKLFKVVSNGIYEIVDNACNHNTIATPLSQKAFSPLAYMSEMMVPNDMPMKMHDFAARC CHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHH INLIGLSCQIMNTHQSNFKTTDTYLICKSFISNVCDELEMPSNSYQRQYWLEQIDNKLL HHHHCCHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA