BacMap

Definition	Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome.
Accession	NC_011369
Length	4,537,948

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The map label for this gene is ybbO [H]

Identifier: 209551133

GI number: 209551133

Start: 3685959

End: 3686792

Strand: Direct

Name: ybbO [H]

Synonym: Rleg2_3557

Alternate gene names: 209551133

Gene position: 3685959-3686792 (Clockwise)

Preceding gene: 209551131

Following gene: 209551134

Centisome position: 81.23

GC content: 62.71

Gene sequence:

>834_bases
ATGGCGGCAGAGCGCAGCATCGTCGTGACCGGATGCTCGTCCGGTATCGGTGCGCATTGCGCGCGGGCGCTGAAAGCCGA
TGGATGGCGCGTCTTCGCGACGGTGCGCAAACCGGAAGATTTGCCGGCGCTGGAAGCCGACGGCATCGAAGCCTTCCTGA
TGGATTATGCCAGGCCCGAGACGATTTCCCAGCTGGTCGATACCGTGTTGCAACGCAGCGGCGGCCGCATCGACGCGCTA
TTCAACAACGGCGCCTACGGCCAGCCGGGCGCCGTCGAGGATCTTTCGACGGCAACGCTGCGCGCCCAGTTCGAGGCGAA
TTTCTTCGGCTGGCACGAATTGACGCGGCAGGTGATCCCGGCAATGCGCAAATACGGCCAGGGCCGGATCGTGCAATGCT
CGTCCATCCTCGGCGTCGTGCCCTATCGCTATCGCGGCGCCTATACCGCCTCCAAGTTTGCGCTCGAAGGCCTCAGCATC
ACCCTGCGCATGGAACTGCAGGGCAGCGGCATCCATGTGAGCCTGATCGAGCCCGGACCGATCGCGACGCGTTTCACCAC
CAACGCACTCGCCAAGATCCGCGAGCATATCGACGTCGAGAATTCGCCGCACGCGGCCGACTATGTCAGGCAACTGGCAA
GACTCGACGGATCGGGCCCGGTCAACCGCCACAAGCTTGGCCCGGAGGCGGTCTATTCCGTCTTGAAACACGCATTGAAC
TCGAAAAATCCGAGGCCACATTATCCCGTAACGACACCGGCCAAGCAGGGCATGTTCCTGAAGCGGCTGCTTCCGGCAGA
CCTCTTCTACCGCCTGATGCGCTGGACAGACTGA

Upstream 100 bases:

>100_bases
GATCGTGCGCAGCGCCTTCGGCATTCCGTTCCCGGCTTTCCAGATTGTATCCTCTGGCCGAATATGGGAAACGAGTCCCA
TTTTGTACAGGAATCATTCC

Downstream 100 bases:

>100_bases
GAAAGCTGAATGCCATGTCCACGGTCACCTATATCCTCGCGATCATCGTCATGGGCTGCGTCGCCCTGGTCCTGATCCGC
GGCCTCTTCAACATGATGAA

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MAAERSIVVTGCSSGIGAHCARALKADGWRVFATVRKPEDLPALEADGIEAFLMDYARPETISQLVDTVLQRSGGRIDAL
FNNGAYGQPGAVEDLSTATLRAQFEANFFGWHELTRQVIPAMRKYGQGRIVQCSSILGVVPYRYRGAYTASKFALEGLSI
TLRMELQGSGIHVSLIEPGPIATRFTTNALAKIREHIDVENSPHAADYVRQLARLDGSGPVNRHKLGPEAVYSVLKHALN
SKNPRPHYPVTTPAKQGMFLKRLLPADLFYRLMRWTD

Sequences:

>Translated_277_residues
MAAERSIVVTGCSSGIGAHCARALKADGWRVFATVRKPEDLPALEADGIEAFLMDYARPETISQLVDTVLQRSGGRIDAL
FNNGAYGQPGAVEDLSTATLRAQFEANFFGWHELTRQVIPAMRKYGQGRIVQCSSILGVVPYRYRGAYTASKFALEGLSI
TLRMELQGSGIHVSLIEPGPIATRFTTNALAKIREHIDVENSPHAADYVRQLARLDGSGPVNRHKLGPEAVYSVLKHALN
SKNPRPHYPVTTPAKQGMFLKRLLPADLFYRLMRWTD
>Mature_276_residues
AAERSIVVTGCSSGIGAHCARALKADGWRVFATVRKPEDLPALEADGIEAFLMDYARPETISQLVDTVLQRSGGRIDALF
NNGAYGQPGAVEDLSTATLRAQFEANFFGWHELTRQVIPAMRKYGQGRIVQCSSILGVVPYRYRGAYTASKFALEGLSIT
LRMELQGSGIHVSLIEPGPIATRFTTNALAKIREHIDVENSPHAADYVRQLARLDGSGPVNRHKLGPEAVYSVLKHALNS
KNPRPHYPVTTPAKQGMFLKRLLPADLFYRLMRWTD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=221, Percent_Identity=35.2941176470588, Blast_Score=126, Evalue=2e-29,
Organism=Homo sapiens, GI19743808, Length=279, Percent_Identity=30.4659498207885, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI40548397, Length=266, Percent_Identity=30.8270676691729, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI214010158, Length=266, Percent_Identity=30.8270676691729, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI214010156, Length=266, Percent_Identity=30.8270676691729, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI22758144, Length=266, Percent_Identity=30.8270676691729, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI223718074, Length=265, Percent_Identity=30.188679245283, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI119392083, Length=224, Percent_Identity=33.0357142857143, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI150247226, Length=291, Percent_Identity=28.1786941580756, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI7706318, Length=196, Percent_Identity=35.2040816326531, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI20149619, Length=196, Percent_Identity=32.1428571428571, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI22507405, Length=258, Percent_Identity=29.4573643410853, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI4504503, Length=285, Percent_Identity=28.4210526315789, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI44680136, Length=185, Percent_Identity=29.7297297297297, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI44680133, Length=185, Percent_Identity=29.7297297297297, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI17738292, Length=185, Percent_Identity=29.7297297297297, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI32483357, Length=192, Percent_Identity=31.7708333333333, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI109715829, Length=196, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI50726952, Length=287, Percent_Identity=25.7839721254355, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI5031737, Length=190, Percent_Identity=31.0526315789474, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=31.0526315789474, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI59889578, Length=165, Percent_Identity=29.6969696969697, Blast_Score=65, Evalue=8e-11,
Organism=Homo sapiens, GI38348362, Length=176, Percent_Identity=28.4090909090909, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI1786701, Length=271, Percent_Identity=42.0664206642066, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI1787335, Length=183, Percent_Identity=28.4153005464481, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787820, Length=191, Percent_Identity=28.7958115183246, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786812, Length=181, Percent_Identity=29.8342541436464, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI87082100, Length=185, Percent_Identity=30.2702702702703, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788459, Length=184, Percent_Identity=29.3478260869565, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17570069, Length=208, Percent_Identity=29.8076923076923, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71997402, Length=209, Percent_Identity=30.1435406698565, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI115534660, Length=257, Percent_Identity=24.9027237354086, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560676, Length=193, Percent_Identity=31.6062176165803, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193210355, Length=266, Percent_Identity=28.1954887218045, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17557780, Length=286, Percent_Identity=24.1258741258741, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17507613, Length=272, Percent_Identity=25.7352941176471, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI32563809, Length=272, Percent_Identity=25.7352941176471, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17560332, Length=198, Percent_Identity=29.2929292929293, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17565030, Length=226, Percent_Identity=30.0884955752212, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6322067, Length=241, Percent_Identity=26.5560165975104, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6323882, Length=196, Percent_Identity=29.0816326530612, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=31.6326530612245, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24651139, Length=302, Percent_Identity=28.476821192053, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI28571526, Length=188, Percent_Identity=30.8510638297872, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI23397609, Length=193, Percent_Identity=29.0155440414508, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI28571387, Length=196, Percent_Identity=32.6530612244898, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24641232, Length=212, Percent_Identity=29.7169811320755, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24580925, Length=198, Percent_Identity=29.2929292929293, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21355319, Length=186, Percent_Identity=28.494623655914, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24648693, Length=200, Percent_Identity=32.5, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI21355889, Length=200, Percent_Identity=32.5, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI21357041, Length=223, Percent_Identity=27.8026905829596, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI21356301, Length=193, Percent_Identity=31.6062176165803, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30534; Mature: 30403

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAERSIVVTGCSSGIGAHCARALKADGWRVFATVRKPEDLPALEADGIEAFLMDYARPE
CCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHCCHH
TISQLVDTVLQRSGGRIDALFNNGAYGQPGAVEDLSTATLRAQFEANFFGWHELTRQVIP
HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHEEECCCCCCCHHHHHHHHHH
AMRKYGQGRIVQCSSILGVVPYRYRGAYTASKFALEGLSITLRMELQGSGIHVSLIEPGP
HHHHCCCCCEEEHHHHHHCCCHHHCCCCHHHHHEECCEEEEEEEEECCCCEEEEEECCCC
IATRFTTNALAKIREHIDVENSPHAADYVRQLARLDGSGPVNRHKLGPEAVYSVLKHALN
CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHC
SKNPRPHYPVTTPAKQGMFLKRLLPADLFYRLMRWTD
CCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AAERSIVVTGCSSGIGAHCARALKADGWRVFATVRKPEDLPALEADGIEAFLMDYARPE
CCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHCCHH
TISQLVDTVLQRSGGRIDALFNNGAYGQPGAVEDLSTATLRAQFEANFFGWHELTRQVIP
HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHEEECCCCCCCHHHHHHHHHH
AMRKYGQGRIVQCSSILGVVPYRYRGAYTASKFALEGLSITLRMELQGSGIHVSLIEPGP
HHHHCCCCCEEEHHHHHHCCCHHHCCCCHHHHHEECCEEEEEEEEECCCCEEEEEECCCC
IATRFTTNALAKIREHIDVENSPHAADYVRQLARLDGSGPVNRHKLGPEAVYSVLKHALN
CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHC
SKNPRPHYPVTTPAKQGMFLKRLLPADLFYRLMRWTD
CCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]