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The map label for this gene is yvrC [H]

Identifier: 209549862

GI number: 209549862

Start: 2331473

End: 2332489

Strand: Reverse

Name: yvrC [H]

Synonym: Rleg2_2275

Alternate gene names: 209549862

Gene position: 2332489-2331473 (Counterclockwise)

Preceding gene: 209549863

Following gene: 209549861

Centisome position: 51.4

GC content: 60.77

Gene sequence:

>1017_bases
ATGCGCCAGATTCTCGCCACCATGACATTTGCCTTCGGGCTGATCGGCCTTGCGGCACCCGGCCTTGCCGCCACCCAATA
TCCTTTGACCATCACCAATTGCGGTGAGCAGGTGACTTTCCGGAAAGCGCCATCGAAGATCGTTTCGATCGGCCAGGGCA
TGACCGAAATTCTCTTCTCGCTCGGTCTTGCCGACAAGATCGCCGGCACGGCCGTCTGGGTCGGTCCGGTCCTGCCGCAA
TATGCCGAGGCCAACAGCAGGATAAAGCGTCTCGCCGACAATGATCCGAGCTTCGAATCCGTCGTCGGACAGGAGCCCGA
CCTGGTGGCGGCCGAGTTCGAATGGCATGTCGGCGCGCAGGGCTCGGTCGGCAAGCGGGAGCAGTTCCAGGATCTCGGGA
TCAATACCTATCTCGCGCCGGCCGATTGCGTCGCCAAGGTCAACACCGATGGCGGCGACGGTGTGCGCAAGGAGCTGTTC
ACGATGGAGCTGGTCTACCGTGAGATCGCCGAGCTCTCGGAGATCTTCGACGTGAAGGAGCGCGGCGATGCGCTGATTTC
CAAGTTGAAGAAGCGCGAGGCGGATGCCGTCGCATCGATATCCGGCGCATCGGGCAAGAACCTGCCTATCGTCTTCTGGT
TCTCCAGCAAGGAAGTCAACGGCGATGCCTTCATCGCCGGCAAGAACAGCGCGCCTGCCTATATCCTGAAGGCGATCGGC
GCCAGGAATGTCGTCACGACCGAAGAGGAATGGCCGCTGGTCGGCTGGGAAACCATTTCTCAGGCGAACCCGGCCGTCAT
CGTGCTCGCCACCATGGACCGGCGCCGCTACGCCGCCGACGATCCGAAGGTCAAGATCGATTTTCTCGAAAACGACCCGG
TGACCAAGGAGCTTGACGCGGTCAAGAACAAGCACTTCGTGATGATGGACGCGCAATCGATGAACCCGACGATCCGGACG
ATCGACGGCATCGAGACCTTGGCGAAGGGCATCAAATCCTTCGGCCTGTCGCAGTGA

Upstream 100 bases:

>100_bases
ATCCGTCTCGATTGGGCCTCCTGCGGCTAGCGCGCGCGTCAGCGTGTCTTCGGCCGCGCGTGCGGCATAACCGTGCTTTT
TCCCTTCAATCGAGGTTTTC

Downstream 100 bases:

>100_bases
AGGCAGTGTCGCTCAGGCAACAGGGATGGTGGGCGCTTGGCGCGCTCACCATTTCAGCCATTCTCCTTCTCGGACTGATG
ATCAGCCTTGCCGTTTCGAT

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MRQILATMTFAFGLIGLAAPGLAATQYPLTITNCGEQVTFRKAPSKIVSIGQGMTEILFSLGLADKIAGTAVWVGPVLPQ
YAEANSRIKRLADNDPSFESVVGQEPDLVAAEFEWHVGAQGSVGKREQFQDLGINTYLAPADCVAKVNTDGGDGVRKELF
TMELVYREIAELSEIFDVKERGDALISKLKKREADAVASISGASGKNLPIVFWFSSKEVNGDAFIAGKNSAPAYILKAIG
ARNVVTTEEEWPLVGWETISQANPAVIVLATMDRRRYAADDPKVKIDFLENDPVTKELDAVKNKHFVMMDAQSMNPTIRT
IDGIETLAKGIKSFGLSQ

Sequences:

>Translated_338_residues
MRQILATMTFAFGLIGLAAPGLAATQYPLTITNCGEQVTFRKAPSKIVSIGQGMTEILFSLGLADKIAGTAVWVGPVLPQ
YAEANSRIKRLADNDPSFESVVGQEPDLVAAEFEWHVGAQGSVGKREQFQDLGINTYLAPADCVAKVNTDGGDGVRKELF
TMELVYREIAELSEIFDVKERGDALISKLKKREADAVASISGASGKNLPIVFWFSSKEVNGDAFIAGKNSAPAYILKAIG
ARNVVTTEEEWPLVGWETISQANPAVIVLATMDRRRYAADDPKVKIDFLENDPVTKELDAVKNKHFVMMDAQSMNPTIRT
IDGIETLAKGIKSFGLSQ
>Mature_338_residues
MRQILATMTFAFGLIGLAAPGLAATQYPLTITNCGEQVTFRKAPSKIVSIGQGMTEILFSLGLADKIAGTAVWVGPVLPQ
YAEANSRIKRLADNDPSFESVVGQEPDLVAAEFEWHVGAQGSVGKREQFQDLGINTYLAPADCVAKVNTDGGDGVRKELF
TMELVYREIAELSEIFDVKERGDALISKLKKREADAVASISGASGKNLPIVFWFSSKEVNGDAFIAGKNSAPAYILKAIG
ARNVVTTEEEWPLVGWETISQANPAVIVLATMDRRRYAADDPKVKIDFLENDPVTKELDAVKNKHFVMMDAQSMNPTIRT
IDGIETLAKGIKSFGLSQ

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 36644; Mature: 36644

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQILATMTFAFGLIGLAAPGLAATQYPLTITNCGEQVTFRKAPSKIVSIGQGMTEILFS
CHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEHHCCHHHHHHCCCHHHHHHH
LGLADKIAGTAVWVGPVLPQYAEANSRIKRLADNDPSFESVVGQEPDLVAAEFEWHVGAQ
HCCHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEEEEECCCC
GSVGKREQFQDLGINTYLAPADCVAKVNTDGGDGVRKELFTMELVYREIAELSEIFDVKE
CCCCCHHHHHHCCCCEEECCHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGDALISKLKKREADAVASISGASGKNLPIVFWFSSKEVNGDAFIAGKNSAPAYILKAIG
HHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEECCCCCCCCEEEEECCCCCHHHHHHHC
ARNVVTTEEEWPLVGWETISQANPAVIVLATMDRRRYAADDPKVKIDFLENDPVTKELDA
CCCEEECCCCCCCCCHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCHHHHHH
VKNKHFVMMDAQSMNPTIRTIDGIETLAKGIKSFGLSQ
HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRQILATMTFAFGLIGLAAPGLAATQYPLTITNCGEQVTFRKAPSKIVSIGQGMTEILFS
CHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEHHCCHHHHHHCCCHHHHHHH
LGLADKIAGTAVWVGPVLPQYAEANSRIKRLADNDPSFESVVGQEPDLVAAEFEWHVGAQ
HCCHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEEEEECCCC
GSVGKREQFQDLGINTYLAPADCVAKVNTDGGDGVRKELFTMELVYREIAELSEIFDVKE
CCCCCHHHHHHCCCCEEECCHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGDALISKLKKREADAVASISGASGKNLPIVFWFSSKEVNGDAFIAGKNSAPAYILKAIG
HHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEECCCCCCCCEEEEECCCCCHHHHHHHC
ARNVVTTEEEWPLVGWETISQANPAVIVLATMDRRRYAADDPKVKIDFLENDPVTKELDA
CCCEEECCCCCCCCCHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCHHHHHH
VKNKHFVMMDAQSMNPTIRTIDGIETLAKGIKSFGLSQ
HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]