Click here to switch to the map view.

The map label for this gene is pdtaR [H]

Identifier: 209549058

GI number: 209549058

Start: 1481330

End: 1481917

Strand: Reverse

Name: pdtaR [H]

Synonym: Rleg2_1455

Alternate gene names: 209549058

Gene position: 1481917-1481330 (Counterclockwise)

Preceding gene: 209549064

Following gene: 209549057

Centisome position: 32.66

GC content: 60.2

Gene sequence:

>588_bases
ATGAAGCATCTCGATCTGACGATTCTGGTGATCGACGAAAATGCCATCCGCGCCTCCATCATTGAAGAAGGGCTGCGCGA
GGCAGGGCATGTGCGCGTCACCGTCGTGCACGAGGTCAACGGCATCGCGCGGACCATCGAAACGCTGATGCCCGATGTGA
TCATCATCGATATCGAAAACCCCAACCGCGACATGATGGAGCATCTGTTCCAGCTGACACGCACGGTCAGCCGTCCGATC
GCCATGTTCGTCGATCGCTCCGACACGGCCTCGATCGAGGCTGCGGTCGATGCCGGCGTCTCCGCCTATATCGTCGACGG
ATTGAAGAAGGAACGCGTCAAACCGATCCTCGACATGGCCGTCAGCCGCTTCAATGCCTTCAGCCGGCTGCGGCGGGAAC
TTGCCGATGCCCGGTCGGCGCTGGAGGAACGCAAGCTCATCGAGCGCGCCAAGGGCATATTGATGAAGATGCGCGGCCTG
TCCGAGGAGGAGGCCTTCGCCCTGCTGCGCCAGACGGCGATGAACGAAAAGAAGAAGATGTCGGAAATCGCCCAGAGCGT
TGTCACCGCCGCGGGACTTTTGATGTGA

Upstream 100 bases:

>100_bases
GAAACTGCAGCAGTTTGATTAATTTTTAGGCGTTAAAGTTGCTGCACATTTTTCAGGCTAAACCTTGCCAAAATTGCTGC
GGCGCGTCATAAATATAGTC

Downstream 100 bases:

>100_bases
TCGCGGGCCTCCTAGAGCGGTTCAGCTTTTCACGGAAGCGCAGAACCGCTCTAAGCTTTTGTTTTAACGCAATTCCGGAC
GGAAAACCGCTTCGCACTTT

Product: response regulator receiver and ANTAR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MKHLDLTILVIDENAIRASIIEEGLREAGHVRVTVVHEVNGIARTIETLMPDVIIIDIENPNRDMMEHLFQLTRTVSRPI
AMFVDRSDTASIEAAVDAGVSAYIVDGLKKERVKPILDMAVSRFNAFSRLRRELADARSALEERKLIERAKGILMKMRGL
SEEEAFALLRQTAMNEKKKMSEIAQSVVTAAGLLM

Sequences:

>Translated_195_residues
MKHLDLTILVIDENAIRASIIEEGLREAGHVRVTVVHEVNGIARTIETLMPDVIIIDIENPNRDMMEHLFQLTRTVSRPI
AMFVDRSDTASIEAAVDAGVSAYIVDGLKKERVKPILDMAVSRFNAFSRLRRELADARSALEERKLIERAKGILMKMRGL
SEEEAFALLRQTAMNEKKKMSEIAQSVVTAAGLLM
>Mature_195_residues
MKHLDLTILVIDENAIRASIIEEGLREAGHVRVTVVHEVNGIARTIETLMPDVIIIDIENPNRDMMEHLFQLTRTVSRPI
AMFVDRSDTASIEAAVDAGVSAYIVDGLKKERVKPILDMAVSRFNAFSRLRRELADARSALEERKLIERAKGILMKMRGL
SEEEAFALLRQTAMNEKKKMSEIAQSVVTAAGLLM

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 21840; Mature: 21840

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHLDLTILVIDENAIRASIIEEGLREAGHVRVTVVHEVNGIARTIETLMPDVIIIDIEN
CCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHCCCEEEEEECC
PNRDMMEHLFQLTRTVSRPIAMFVDRSDTASIEAAVDAGVSAYIVDGLKKERVKPILDMA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
VSRFNAFSRLRRELADARSALEERKLIERAKGILMKMRGLSEEEAFALLRQTAMNEKKKM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
SEIAQSVVTAAGLLM
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MKHLDLTILVIDENAIRASIIEEGLREAGHVRVTVVHEVNGIARTIETLMPDVIIIDIEN
CCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHCCCEEEEEECC
PNRDMMEHLFQLTRTVSRPIAMFVDRSDTASIEAAVDAGVSAYIVDGLKKERVKPILDMA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
VSRFNAFSRLRRELADARSALEERKLIERAKGILMKMRGLSEEEAFALLRQTAMNEKKKM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
SEIAQSVVTAAGLLM
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]