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The map label for this gene is nrtC [H]

Identifier: 209549057

GI number: 209549057

Start: 1479910

End: 1481187

Strand: Reverse

Name: nrtC [H]

Synonym: Rleg2_1454

Alternate gene names: 209549057

Gene position: 1481187-1479910 (Counterclockwise)

Preceding gene: 209549058

Following gene: 209549056

Centisome position: 32.64

GC content: 64.63

Gene sequence:

>1278_bases
ATGATGACGAACACCGCCAGTTCCAGCGGCGGGCTGCCCTCGCCCGCGCATATCAACAGTGAAGGGCCAAAAGTGCTGCG
GGCCGGTTTCATTCCGCTCGTCGACGCATCGGTGCTGATAGCAGCGGCGGAATTCGGTTTCGCGCAGAAGGAAGGCCTGA
CGCTCGATCTCGTCAAGGACGTCTCCTGGGCGAATGTGCGCGACCGCCTGGCGTTCCGCCAGTTCGACATTGCCCATATG
CTGTCGCCGATGCCGGTCGCCTCCATGCTCGGTCTCGGCTCCAATCCCTCGCCGACGATCACGCCGTTTTCCCTTGGGCG
CGGCGGCAATGCAATCACGCTGTCGACGCGGCTCTTCGACAGGATGCGGGATGACGCCGGATTGCCGGAAACGGCAAGCG
CGCTCGACAACGCCCATGCTCTGGCCAAAACGGTCGCGGCGATGAAGGCGCGCGGCGAGCCGCTGCCGACCTTCGGGGTC
ACCTATCCTTTCTCCTCGCACAATTACGAATTCCGCTACTGGCTGGCGGCCGGCGGCATTAATCCCGACAAGGACGTCAA
GCTCGTCGTCGTGCCGCCGCCGCTGACCTCGGATGCCCTGGCGGCCGGGGCGATCGACGGCTTCTGCGTCGGCGCGCCTT
GGAACATGGTCGCCTCGGAGCGCGGTGTCGGGCGCATCGTCGCCGCCAAACAGGATATCTGGCCGTCGGCCCCGGAAAAG
GTGATCGGCATGCGTCCGGATTGGGCGGAAAGCCATCCGGAAACCGTTTCCCGGCTGATCGTGGCGCTCGACGCGGCAGC
CCGCTGGTGCGACCGGCCGGACAATCACGACGCGCTGGCGACAGCGCTTGCCGATCCGCGTTATATCGCCGCCCCCGTCG
GCATCATTCGCCGCGTCCTCGCCGGCGAATTCAGCCTCGACGCTAGGGGCAACCGGCGCATCATCGCCGATTATTTCCAG
TTTCATTCCGGTTTCGCCAATTATCCGAGGCCCAGCCATGCGCTTTGGATCTACAGCCAGATGATCCGCTGGGGACAGGC
CGAGCTCAGCCTCAACAAGGCGCGGGCGGCCGCCTCCGCCTACCGTCCCGATCTCTATCGCAGAGCGCTCGGCGACGCCA
ATGCACCTGATGACGCCGATATCCGCATCGAAGGCAATGACGAAGGCGATCGCTTCATGGACGGCCACGTCTTCGATCCG
ACGGAACTGCCGGACTATGTCGCGGGCTTTGCTGTCAAAAGCGCCCTGCCCGTCGCTTCCCATAGCGATGAGACCTGA

Upstream 100 bases:

>100_bases
GAACCGCTCTAAGCTTTTGTTTTAACGCAATTCCGGACGGAAAACCGCTTCGCACTTTTCCTGGAATTGCTCTAGATTTC
CGGAGGAAACCGGAGTGGAT

Downstream 100 bases:

>100_bases
TCCATGCCGGCCTGCACAAAACGCCAGCAAAATTCGATGCCCGCCATCACCGCAACGCACAAAAGATTTGCACGTTTTTT
GGCAGCCGCAAAAACGTGCA

Product: nitrate ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MMTNTASSSGGLPSPAHINSEGPKVLRAGFIPLVDASVLIAAAEFGFAQKEGLTLDLVKDVSWANVRDRLAFRQFDIAHM
LSPMPVASMLGLGSNPSPTITPFSLGRGGNAITLSTRLFDRMRDDAGLPETASALDNAHALAKTVAAMKARGEPLPTFGV
TYPFSSHNYEFRYWLAAGGINPDKDVKLVVVPPPLTSDALAAGAIDGFCVGAPWNMVASERGVGRIVAAKQDIWPSAPEK
VIGMRPDWAESHPETVSRLIVALDAAARWCDRPDNHDALATALADPRYIAAPVGIIRRVLAGEFSLDARGNRRIIADYFQ
FHSGFANYPRPSHALWIYSQMIRWGQAELSLNKARAAASAYRPDLYRRALGDANAPDDADIRIEGNDEGDRFMDGHVFDP
TELPDYVAGFAVKSALPVASHSDET

Sequences:

>Translated_425_residues
MMTNTASSSGGLPSPAHINSEGPKVLRAGFIPLVDASVLIAAAEFGFAQKEGLTLDLVKDVSWANVRDRLAFRQFDIAHM
LSPMPVASMLGLGSNPSPTITPFSLGRGGNAITLSTRLFDRMRDDAGLPETASALDNAHALAKTVAAMKARGEPLPTFGV
TYPFSSHNYEFRYWLAAGGINPDKDVKLVVVPPPLTSDALAAGAIDGFCVGAPWNMVASERGVGRIVAAKQDIWPSAPEK
VIGMRPDWAESHPETVSRLIVALDAAARWCDRPDNHDALATALADPRYIAAPVGIIRRVLAGEFSLDARGNRRIIADYFQ
FHSGFANYPRPSHALWIYSQMIRWGQAELSLNKARAAASAYRPDLYRRALGDANAPDDADIRIEGNDEGDRFMDGHVFDP
TELPDYVAGFAVKSALPVASHSDET
>Mature_425_residues
MMTNTASSSGGLPSPAHINSEGPKVLRAGFIPLVDASVLIAAAEFGFAQKEGLTLDLVKDVSWANVRDRLAFRQFDIAHM
LSPMPVASMLGLGSNPSPTITPFSLGRGGNAITLSTRLFDRMRDDAGLPETASALDNAHALAKTVAAMKARGEPLPTFGV
TYPFSSHNYEFRYWLAAGGINPDKDVKLVVVPPPLTSDALAAGAIDGFCVGAPWNMVASERGVGRIVAAKQDIWPSAPEK
VIGMRPDWAESHPETVSRLIVALDAAARWCDRPDNHDALATALADPRYIAAPVGIIRRVLAGEFSLDARGNRRIIADYFQ
FHSGFANYPRPSHALWIYSQMIRWGQAELSLNKARAAASAYRPDLYRRALGDANAPDDADIRIEGNDEGDRFMDGHVFDP
TELPDYVAGFAVKSALPVASHSDET

Specific function: Probably part of a high-affinity binding-protein- dependent transport system for nitrate. Probably responsible for energy coupling to the transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR015168
- InterPro:   IPR005890 [H]

Pfam domain/function: PF00005 ABC_tran; PF09084 NMT1 [H]

EC number: NA

Molecular weight: Translated: 45805; Mature: 45805

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTNTASSSGGLPSPAHINSEGPKVLRAGFIPLVDASVLIAAAEFGFAQKEGLTLDLVKD
CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCHHHCCCEEEEECC
VSWANVRDRLAFRQFDIAHMLSPMPVASMLGLGSNPSPTITPFSLGRGGNAITLSTRLFD
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCEEECCCCCCEEEEHHHHHH
RMRDDAGLPETASALDNAHALAKTVAAMKARGEPLPTFGVTYPFSSHNYEFRYWLAAGGI
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCEEEEEEEECCC
NPDKDVKLVVVPPPLTSDALAAGAIDGFCVGAPWNMVASERGVGRIVAAKQDIWPSAPEK
CCCCCEEEEEECCCCCHHHHHHCCCCCEEECCCHHHHHCCCCCCEEEEECCCCCCCCCHH
VIGMRPDWAESHPETVSRLIVALDAAARWCDRPDNHDALATALADPRYIAAPVGIIRRVL
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHH
AGEFSLDARGNRRIIADYFQFHSGFANYPRPSHALWIYSQMIRWGQAELSLNKARAAASA
HCCCCCCCCCCCEEHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
YRPDLYRRALGDANAPDDADIRIEGNDEGDRFMDGHVFDPTELPDYVAGFAVKSALPVAS
HCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
HSDET
CCCCC
>Mature Secondary Structure
MMTNTASSSGGLPSPAHINSEGPKVLRAGFIPLVDASVLIAAAEFGFAQKEGLTLDLVKD
CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCHHHCCCEEEEECC
VSWANVRDRLAFRQFDIAHMLSPMPVASMLGLGSNPSPTITPFSLGRGGNAITLSTRLFD
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCEEECCCCCCEEEEHHHHHH
RMRDDAGLPETASALDNAHALAKTVAAMKARGEPLPTFGVTYPFSSHNYEFRYWLAAGGI
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCEEEEEEEECCC
NPDKDVKLVVVPPPLTSDALAAGAIDGFCVGAPWNMVASERGVGRIVAAKQDIWPSAPEK
CCCCCEEEEEECCCCCHHHHHHCCCCCEEECCCHHHHHCCCCCCEEEEECCCCCCCCCHH
VIGMRPDWAESHPETVSRLIVALDAAARWCDRPDNHDALATALADPRYIAAPVGIIRRVL
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHH
AGEFSLDARGNRRIIADYFQFHSGFANYPRPSHALWIYSQMIRWGQAELSLNKARAAASA
HCCCCCCCCCCCEEHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
YRPDLYRRALGDANAPDDADIRIEGNDEGDRFMDGHVFDPTELPDYVAGFAVKSALPVAS
HCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
HSDET
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]