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The map label for this gene is yhjC [H]

Identifier: 209548508

GI number: 209548508

Start: 920842

End: 921729

Strand: Direct

Name: yhjC [H]

Synonym: Rleg2_0905

Alternate gene names: 209548508

Gene position: 920842-921729 (Clockwise)

Preceding gene: 209548505

Following gene: 209548510

Centisome position: 20.29

GC content: 60.59

Gene sequence:

>888_bases
ATGACCGATCTCACCAATTTGAAGACCTTTGTCGCCGTGGCGACGGCCGGTAGTTTTGCCAAAGCTGCCGCCAGGCTCAA
CCTGTCGCCCGCCATGGTGGGCCGGCGCGTTCAGGCTTTGGAAACAGATTATGGGGTCAAGCTGATCGAGCGCACCACGC
GAACCCAGAGGCTCACCGAGATCGGTCGCAGATTTCTGGAGAGAGCAAGCAGGGTCATCGATGAGCTGGAGCAGTTGAAC
GATATTACCGGCCCCGACAACCACGGAATATCCGGCCACCTCCGCATCAGCGGTCCGACGACGCTCGGCGTGAAGCGCTT
GGCATCGTCCATTGCTCGCTTTGCCAATCAGCATCCCGCGGTCAGTCTGGAGCTTAATCTGACCGACCGGAACGTCGATC
TGATCGCCGAAGGCTATGACCTTGCTATTCGGGTGGCGCATCTGCGGCCATCTTCCCTGATCGCAAGAAAGATCGGCACC
TATCGCTTCGTCTGCTGCGCCTCTCCCCGCTATCTCGGCAAGAACGGCACCCCGACCCATCCCGAGCAGTTGCAAGAGCA
CCGCTGCATCCTCAGCCTCAACCTCGTCCCGCGCGATCAATGGCATTTCGAAGATCAAAGTGGACGGGTGCTGGCGGCAA
AGATCAACAGCAATATCGGTATCGACAATGGCGAAGCCATGCGTGTTGCCGCCATAGAAGACGCCGGCCTCGTCTATGCG
CCGCTGGTGCTGGTAGAGGAAGACATCGCCGCCGGGCGGTTGACCGAGGTGCTTGCCGATTGGGAAAAGTACAGCCTGCC
GATCCATGCGGTTCACCCGTCGCGGCAATTCGTGCCGCGGCGGGTGAAGGCCGCGATCGGCTGGATCGCCGGAGATCTCC
GCCGGTAG

Upstream 100 bases:

>100_bases
GGTCGGTTCCTTCATCGAGTTGAATGACGTCGATATAGCCGACAGCGATCCCCTCATGAATGGCATTGAATGGAAGAACA
TAATTGCATAAAAGTATCGA

Downstream 100 bases:

>100_bases
AGTCCGCGCAAACAGAAAGCGCATTCGGCGGCGGTCAGCGACCTTACTGCAGCTGCGGCTTCTTGAGAAAATTGTTGCGG
TCGGCGGACTTGATGCGCAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MTDLTNLKTFVAVATAGSFAKAAARLNLSPAMVGRRVQALETDYGVKLIERTTRTQRLTEIGRRFLERASRVIDELEQLN
DITGPDNHGISGHLRISGPTTLGVKRLASSIARFANQHPAVSLELNLTDRNVDLIAEGYDLAIRVAHLRPSSLIARKIGT
YRFVCCASPRYLGKNGTPTHPEQLQEHRCILSLNLVPRDQWHFEDQSGRVLAAKINSNIGIDNGEAMRVAAIEDAGLVYA
PLVLVEEDIAAGRLTEVLADWEKYSLPIHAVHPSRQFVPRRVKAAIGWIAGDLRR

Sequences:

>Translated_295_residues
MTDLTNLKTFVAVATAGSFAKAAARLNLSPAMVGRRVQALETDYGVKLIERTTRTQRLTEIGRRFLERASRVIDELEQLN
DITGPDNHGISGHLRISGPTTLGVKRLASSIARFANQHPAVSLELNLTDRNVDLIAEGYDLAIRVAHLRPSSLIARKIGT
YRFVCCASPRYLGKNGTPTHPEQLQEHRCILSLNLVPRDQWHFEDQSGRVLAAKINSNIGIDNGEAMRVAAIEDAGLVYA
PLVLVEEDIAAGRLTEVLADWEKYSLPIHAVHPSRQFVPRRVKAAIGWIAGDLRR
>Mature_294_residues
TDLTNLKTFVAVATAGSFAKAAARLNLSPAMVGRRVQALETDYGVKLIERTTRTQRLTEIGRRFLERASRVIDELEQLND
ITGPDNHGISGHLRISGPTTLGVKRLASSIARFANQHPAVSLELNLTDRNVDLIAEGYDLAIRVAHLRPSSLIARKIGTY
RFVCCASPRYLGKNGTPTHPEQLQEHRCILSLNLVPRDQWHFEDQSGRVLAAKINSNIGIDNGEAMRVAAIEDAGLVYAP
LVLVEEDIAAGRLTEVLADWEKYSLPIHAVHPSRQFVPRRVKAAIGWIAGDLRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=32.8813559322034, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI87081978, Length=290, Percent_Identity=30.3448275862069, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=27.4305555555556, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1789639, Length=288, Percent_Identity=28.8194444444444, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=29.2682926829268, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1789440, Length=289, Percent_Identity=26.9896193771626, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1790011, Length=297, Percent_Identity=26.2626262626263, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1787589, Length=280, Percent_Identity=25.7142857142857, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1788706, Length=299, Percent_Identity=26.4214046822742, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1786448, Length=292, Percent_Identity=24.3150684931507, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1789173, Length=273, Percent_Identity=26.3736263736264, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787879, Length=155, Percent_Identity=29.6774193548387, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786713, Length=152, Percent_Identity=32.2368421052632, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790208, Length=130, Percent_Identity=33.8461538461538, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787806, Length=124, Percent_Identity=28.2258064516129, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32591; Mature: 32460

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLTNLKTFVAVATAGSFAKAAARLNLSPAMVGRRVQALETDYGVKLIERTTRTQRLTE
CCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
IGRRFLERASRVIDELEQLNDITGPDNHGISGHLRISGPTTLGVKRLASSIARFANQHPA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCC
VSLELNLTDRNVDLIAEGYDLAIRVAHLRPSSLIARKIGTYRFVCCASPRYLGKNGTPTH
EEEEEEEECCCEEEEECCCEEEEEEEECCCHHHHHHHHCCEEEEEECCCCCCCCCCCCCC
PEQLQEHRCILSLNLVPRDQWHFEDQSGRVLAAKINSNIGIDNGEAMRVAAIEDAGLVYA
HHHHHHCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCEEE
PLVLVEEDIAAGRLTEVLADWEKYSLPIHAVHPSRQFVPRRVKAAIGWIAGDLRR
HHEEEECCHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TDLTNLKTFVAVATAGSFAKAAARLNLSPAMVGRRVQALETDYGVKLIERTTRTQRLTE
CCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
IGRRFLERASRVIDELEQLNDITGPDNHGISGHLRISGPTTLGVKRLASSIARFANQHPA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCC
VSLELNLTDRNVDLIAEGYDLAIRVAHLRPSSLIARKIGTYRFVCCASPRYLGKNGTPTH
EEEEEEEECCCEEEEECCCEEEEEEEECCCHHHHHHHHCCEEEEEECCCCCCCCCCCCCC
PEQLQEHRCILSLNLVPRDQWHFEDQSGRVLAAKINSNIGIDNGEAMRVAAIEDAGLVYA
HHHHHHCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCEEE
PLVLVEEDIAAGRLTEVLADWEKYSLPIHAVHPSRQFVPRRVKAAIGWIAGDLRR
HHEEEECCHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]