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The map label for this gene is yjiR [C]

Identifier: 209548510

GI number: 209548510

Start: 922955

End: 924358

Strand: Direct

Name: yjiR [C]

Synonym: Rleg2_0907

Alternate gene names: 209548510

Gene position: 922955-924358 (Clockwise)

Preceding gene: 209548508

Following gene: 209548511

Centisome position: 20.34

GC content: 66.52

Gene sequence:

>1404_bases
ATGAAAGACTGGCATCCCGATCTCGGGCGCAGCAGCAGCCCGCGTTATATGGCGATCGCCGATGTGATCGAAATGGATCT
GCGCAGCGGCCACCTCGTGGCCGGCGACCGGCTGCCGCCGCAACGCGAACTCGCCAAGCGGCTGAATGTCGATTTTACCA
CGGTGGCGAGAGGTTATGTCGAGGCGCAGAAGCGCGGGTTGGTCGATTCGCATGTCGGCCGCGGCACCTTCGTCACCGGT
AGCGCGGCCAAGGAGAGCCAAGGCTTCGCGCCTGGCGCGGCGCCCGATCCGCGCCGGGCATCTGTCGTCGATTTCTCGAT
GAACATGCCGCCGGAACCTCATGATCCGGAACTGATCGCCCGCATGCGTGACGGCATGGCGACGGTGGCGGCAAACCTCA
TTCCGCTTCTGCGCTATCAGGGTTTCGGCGGTGCCGGCATCGACAAGGAGGCCGCCGCCACCTGGCTCAGCCGTCGCGGC
TTGGCGCCCCCGCAGGAGCGGATCTTCGTCACCCCGGGCGCCCATCCGGCCCTGCTGGCGATCTTCAGCCTGCTGGCAAA
GCCGGGCGAAACCGTGCTCTCGGAAATCATCACCTATCCCGGCATGCGCTCGATCGCTGCCCAGCTGCGGCTCAATCTGG
CGGGCCTGCCGATGGATGAGGACGGCATCCTGCCGGACGCCTTTGCGAGAGCCTGCGAGCGGTTGCAGCCGAAGGCGCTT
TATCTCAATCCGACGCTGCAGAACCCGACGACGCTGACTATCCCGGCCAGGCGCCGCGAGGAAATCGTCACGGTTGCCCG
CAGATATCACGTGCCGATCGTCGAGGACGATGCCTACGGCTTCATTCCGCTGGAAGGCCCGCCGCCGCTTGCGGCAACGG
CGCCCGATCTCACCTGGCATATCGGCGGGCTGGCGAAAAGTATCGGCGCCGGCCTGCGTCTTGCCTATGTCGTGGCGCCG
GATAGCAAGACCGTGTGGCCCTTCGTCAGCGCCATGCGTGCCAACAATGTCATGGCTTCGCCGCTGACGTTGGCGCTCGC
CACCCGCTGGATCGAGGACGGCACGGCCGACGCGATCCTGCGCTTCATCCGCACGGAAGCCGCCGCGCGTCAGCAGATGG
TGGCCGCGCTCCTGCCTGAAGGCAGCTACCGCGCCGATCCGCTCAGTTTCAACATCTGGCTGCCGCTCGCCAATGGCTGG
ACCCGCTCCACCTTCGGCAGCCACATGCGTTCCGCCGGCATCGGCGTCGTGGCAAGCGATGCCTTCACGGTCGAAGGCGC
GGCGCCCGAGGCCGTGCGTGTCTGCCTCGGCGGCCCGATCACCCGGGAGAAGCTGCAGGGCGCACTGGATTTCATGGCCC
ATGCGCTTGAGGGTCCGCCGGAAATGGCGGCTTCGTTCTTCTGA

Upstream 100 bases:

>100_bases
TGCCCGCACCAAGTGTTGCACACGACATTTTTCGTGACAGCGTCACCGTGCAACAATATACAGTCAATCCCATCAAGACT
CAGGCTGCACGGATGACGAC

Downstream 100 bases:

>100_bases
GCCGGCAACGCCGCAGCTGAGCCCCTGAGACAAGCGATCGGTTCTTGCGACCCCTTCAAATGAAGTTTGCACGATCCGCG
GTCGGCCCGGCCTGCGGAAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MKDWHPDLGRSSSPRYMAIADVIEMDLRSGHLVAGDRLPPQRELAKRLNVDFTTVARGYVEAQKRGLVDSHVGRGTFVTG
SAAKESQGFAPGAAPDPRRASVVDFSMNMPPEPHDPELIARMRDGMATVAANLIPLLRYQGFGGAGIDKEAAATWLSRRG
LAPPQERIFVTPGAHPALLAIFSLLAKPGETVLSEIITYPGMRSIAAQLRLNLAGLPMDEDGILPDAFARACERLQPKAL
YLNPTLQNPTTLTIPARRREEIVTVARRYHVPIVEDDAYGFIPLEGPPPLAATAPDLTWHIGGLAKSIGAGLRLAYVVAP
DSKTVWPFVSAMRANNVMASPLTLALATRWIEDGTADAILRFIRTEAAARQQMVAALLPEGSYRADPLSFNIWLPLANGW
TRSTFGSHMRSAGIGVVASDAFTVEGAAPEAVRVCLGGPITREKLQGALDFMAHALEGPPEMAASFF

Sequences:

>Translated_467_residues
MKDWHPDLGRSSSPRYMAIADVIEMDLRSGHLVAGDRLPPQRELAKRLNVDFTTVARGYVEAQKRGLVDSHVGRGTFVTG
SAAKESQGFAPGAAPDPRRASVVDFSMNMPPEPHDPELIARMRDGMATVAANLIPLLRYQGFGGAGIDKEAAATWLSRRG
LAPPQERIFVTPGAHPALLAIFSLLAKPGETVLSEIITYPGMRSIAAQLRLNLAGLPMDEDGILPDAFARACERLQPKAL
YLNPTLQNPTTLTIPARRREEIVTVARRYHVPIVEDDAYGFIPLEGPPPLAATAPDLTWHIGGLAKSIGAGLRLAYVVAP
DSKTVWPFVSAMRANNVMASPLTLALATRWIEDGTADAILRFIRTEAAARQQMVAALLPEGSYRADPLSFNIWLPLANGW
TRSTFGSHMRSAGIGVVASDAFTVEGAAPEAVRVCLGGPITREKLQGALDFMAHALEGPPEMAASFF
>Mature_467_residues
MKDWHPDLGRSSSPRYMAIADVIEMDLRSGHLVAGDRLPPQRELAKRLNVDFTTVARGYVEAQKRGLVDSHVGRGTFVTG
SAAKESQGFAPGAAPDPRRASVVDFSMNMPPEPHDPELIARMRDGMATVAANLIPLLRYQGFGGAGIDKEAAATWLSRRG
LAPPQERIFVTPGAHPALLAIFSLLAKPGETVLSEIITYPGMRSIAAQLRLNLAGLPMDEDGILPDAFARACERLQPKAL
YLNPTLQNPTTLTIPARRREEIVTVARRYHVPIVEDDAYGFIPLEGPPPLAATAPDLTWHIGGLAKSIGAGLRLAYVVAP
DSKTVWPFVSAMRANNVMASPLTLALATRWIEDGTADAILRFIRTEAAARQQMVAALLPEGSYRADPLSFNIWLPLANGW
TRSTFGSHMRSAGIGVVASDAFTVEGAAPEAVRVCLGGPITREKLQGALDFMAHALEGPPEMAASFF

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=229, Percent_Identity=24.8908296943231, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI33469970, Length=229, Percent_Identity=24.8908296943231, Blast_Score=80, Evalue=4e-15,
Organism=Escherichia coli, GI1790797, Length=476, Percent_Identity=23.3193277310924, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787710, Length=381, Percent_Identity=24.4094488188976, Blast_Score=88, Evalue=9e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 50302; Mature: 50302

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDWHPDLGRSSSPRYMAIADVIEMDLRSGHLVAGDRLPPQRELAKRLNVDFTTVARGYV
CCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCHHHHHHHHH
EAQKRGLVDSHVGRGTFVTGSAAKESQGFAPGAAPDPRRASVVDFSMNMPPEPHDPELIA
HHHHCCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHH
RMRDGMATVAANLIPLLRYQGFGGAGIDKEAAATWLSRRGLAPPQERIFVTPGAHPALLA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHCEEECCCCCHHHHH
IFSLLAKPGETVLSEIITYPGMRSIAAQLRLNLAGLPMDEDGILPDAFARACERLQPKAL
HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
YLNPTLQNPTTLTIPARRREEIVTVARRYHVPIVEDDAYGFIPLEGPPPLAATAPDLTWH
EECCCCCCCEEEEECCHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCCCCCCCCEEH
IGGLAKSIGAGLRLAYVVAPDSKTVWPFVSAMRANNVMASPLTLALATRWIEDGTADAIL
HHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHH
RFIRTEAAARQQMVAALLPEGSYRADPLSFNIWLPLANGWTRSTFGSHMRSAGIGVVASD
HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCEEECC
AFTVEGAAPEAVRVCLGGPITREKLQGALDFMAHALEGPPEMAASFF
CEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCC
>Mature Secondary Structure
MKDWHPDLGRSSSPRYMAIADVIEMDLRSGHLVAGDRLPPQRELAKRLNVDFTTVARGYV
CCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCHHHHHHHHH
EAQKRGLVDSHVGRGTFVTGSAAKESQGFAPGAAPDPRRASVVDFSMNMPPEPHDPELIA
HHHHCCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHH
RMRDGMATVAANLIPLLRYQGFGGAGIDKEAAATWLSRRGLAPPQERIFVTPGAHPALLA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHCEEECCCCCHHHHH
IFSLLAKPGETVLSEIITYPGMRSIAAQLRLNLAGLPMDEDGILPDAFARACERLQPKAL
HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE
YLNPTLQNPTTLTIPARRREEIVTVARRYHVPIVEDDAYGFIPLEGPPPLAATAPDLTWH
EECCCCCCCEEEEECCHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCCCCCCCCEEH
IGGLAKSIGAGLRLAYVVAPDSKTVWPFVSAMRANNVMASPLTLALATRWIEDGTADAIL
HHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHH
RFIRTEAAARQQMVAALLPEGSYRADPLSFNIWLPLANGWTRSTFGSHMRSAGIGVVASD
HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCEEECC
AFTVEGAAPEAVRVCLGGPITREKLQGALDFMAHALEGPPEMAASFF
CEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]