Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 209548399

GI number: 209548399

Start: 814046

End: 816343

Strand: Direct

Name: yciR [C]

Synonym: Rleg2_0796

Alternate gene names: 209548399

Gene position: 814046-816343 (Clockwise)

Preceding gene: 209548396

Following gene: 209548401

Centisome position: 17.94

GC content: 64.8

Gene sequence:

>2298_bases
ATGCCCAAACCGAGTGCCAGGCGATGGGAATCGACCGATGCCCTGTCGGCCGAAACGCGGCGCATCGTCGCCGCGACGGA
GGCGATGATGGCCTCGACCGCCCATCATCTCTCCGACGGCATCGAGAACCTGCGCCTGAAGACGATCGTCCACGAACTTC
CGGATTTCCTCTACGTCAAGGATCGTGACAGCCGCTTCGTCTTCGCCAACACCGTCACCGCCAGCAGCCTCGGCCTGGAG
AGCGCTGATCTGCTTACCGGCAAACGTGATTTCGACCTGTTCGATTTCGAGACGGCTCTCCACCATTTCGATATCGAGCA
GCAGATCATGGCGACGGGGCAAGCCTGCATCGACATGGAGGAAAGCTACGTCCTGCCCGGCGGCAAAAGGCCGATATGCC
GGCTGACCTCGAAGATACCGCTGCGCAACGATCGCGGCGAGGTCATCGGCCTCATCGGCGTTTCCCGCGATATCACCGAA
CGCAAGCGCCAGGAGGATCTCCATCGCGAGCAGGCGAACCTGCTCGAAATGATCGCCCGCAACGAGCCGCTGCCGATGAT
CCTCGAGGCGCTGGTGCTGATGATCGAAGCGCAGCTGACCGGCATCGACGGGTCGGTGCTGCTGCTGAACGGCGAGGGCA
CCAGGCTCTATCACGGCGCCGCCCCCAATCTGCCCGGCGGCTACAGCCGGCTGATCGACGGCGTCACCATCGGTCCCAAG
GTGGGCTCGTGCGGCACCGCCGCTTGGCGTGGCCAGACGGTGATCGTCGAAGACGTGATGAGCGATCCGCTGTGGGAGGA
TTTCCGCGCGCTGGTCGCGCCCTTCGGCTTCCGCTCCTGCTGGTCGACGCCGATCGTCACCTCGCAGAACAATGTGCTCG
GCACCTTCGCCCTCTACTCCAGGGAAGTCCGCCGGCCCACGGAGCACGAAATAAAGCTGGTGGCGCTCGCCACGCACATC
GCCGGCATCGCCATCGAGCGCAAGCGTGTCGACGACCGCATCCATTTCATGGCCCATCACGACGATCTCACCGGTCTGCC
GAACCGGGCCTTCCTGAAGGAGCGGCTCGCCAATATCCTCGACCAGGCCCGGCGCCACACCCGCAAGGTGACTGTCGCCT
ATATCGATCTCGATAATTTCAAGGACATCAACGACGGCCGCGGCCACGCCGCCGGTGACGAGGTGCTGAAGGAAACCGCG
GCCCGCATGGCCAACAGCATCCGGGCCTCGGATATGGTGGTGCGTCTCGGCGGCGACGAATTCCTCGTCGTGCTCGTTCA
TCAGTCGAGCCACGATGCCGGCATCACGCGCCGCCTCCGCGAGTTGCAGAAGGCAATCAACCGGCCGATCCCCAGCGAAG
GCGGCGAGATCACCGTCACCTCGAGCATCGGCGTTGCCGCCTTTCCCTTCGACGGCGCGACCTCGGAAGAGCTTCTCGCC
AATGCCGACCGCGCCATGTACCGGGCCAAGGAGCTCGGCCGCAACACCCTGCAGCATCACGATGGCGGCGGCACGCCTGT
GGGAATGCCGCTCGGCGAGCAGGAGGAGCTGCACCAGGCGATTACCGGCGACCAGCTGTTCCTGCAATATCAGCCGCAGG
TCGATGTCGCCACCGGCCGCATCACCGGCATCGAGGCGCTGGTGCGCTGGAACCATCCGGCCAAGGGCAGGGTGCCGCCG
GTCAATTTCATTCCGCTCGCCGAAGAGACCGGCCTCATCGTTCCCCTCGGCCTCTGGGTGCTGAACGAGGCGTGCCGCCA
GGCGCGCCAATGGCAGGATATGGGCCTGACGCCGCTGACCATCGCCGTCAACGTCTCGGCCAAGCAGTTCGCCGATCCGG
ATTTTGCAAGCCACGTCGCCGAAGCGCTGGAGCGCCACCGCCTGCAAGCGCGCTGGCTGGAGCTCGAGGTTACCGAAAGC
GTGGTGATGCAGGATGCCGAACGCGCGCTCGCCATGATGGAATCGCTGCGGGCGCTCGGTGTTCGCCTGTCGATCGACGA
TTTCGGCTCCGGCTATTCCAGCCTGGCGGCGCTGAAGACCTTCCCCTTCGACCGCCTGAAGATGGACCGTTCGCTGGTCG
AGGCCCTGCCGGGCGACAAGACCGCCGTCGCCATCGCCTCGGCGGTCATTTCGCTGGCACAGACGCTGAAGCTTTCGGTC
CTCGCCGAAGGTGTCGAAACCGACGCCCAGATGGATTTCCTGCGTCACGCGCATTGCGAAGAAGCGCAGGGCTATCGCTT
TTCGAAGCCCGTCTCTCCGGAGGAAATCCCCGGATTGCTGCGGGCGCGCAGCCTCTAA

Upstream 100 bases:

>100_bases
TTCATTTAAGCAAGCCGAAGGAAATGAGGACTACTTTGAAGGGAATATTACGGGGTGATTATGCGGGATGAGGCCTTCGG
CCTCCGGGGAGAATGACGGC

Downstream 100 bases:

>100_bases
ACACGAAGGATGTTGAGTCTGAGAGCGCTGACGACGGCTTGCGTTCTTGTCGTACATCCCAGCTTCTTGATTGCGCTGCC
GATGTGATTGTTGACTGCAT

Product: PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 765; Mature: 764

Protein sequence:

>765_residues
MPKPSARRWESTDALSAETRRIVAATEAMMASTAHHLSDGIENLRLKTIVHELPDFLYVKDRDSRFVFANTVTASSLGLE
SADLLTGKRDFDLFDFETALHHFDIEQQIMATGQACIDMEESYVLPGGKRPICRLTSKIPLRNDRGEVIGLIGVSRDITE
RKRQEDLHREQANLLEMIARNEPLPMILEALVLMIEAQLTGIDGSVLLLNGEGTRLYHGAAPNLPGGYSRLIDGVTIGPK
VGSCGTAAWRGQTVIVEDVMSDPLWEDFRALVAPFGFRSCWSTPIVTSQNNVLGTFALYSREVRRPTEHEIKLVALATHI
AGIAIERKRVDDRIHFMAHHDDLTGLPNRAFLKERLANILDQARRHTRKVTVAYIDLDNFKDINDGRGHAAGDEVLKETA
ARMANSIRASDMVVRLGGDEFLVVLVHQSSHDAGITRRLRELQKAINRPIPSEGGEITVTSSIGVAAFPFDGATSEELLA
NADRAMYRAKELGRNTLQHHDGGGTPVGMPLGEQEELHQAITGDQLFLQYQPQVDVATGRITGIEALVRWNHPAKGRVPP
VNFIPLAEETGLIVPLGLWVLNEACRQARQWQDMGLTPLTIAVNVSAKQFADPDFASHVAEALERHRLQARWLELEVTES
VVMQDAERALAMMESLRALGVRLSIDDFGSGYSSLAALKTFPFDRLKMDRSLVEALPGDKTAVAIASAVISLAQTLKLSV
LAEGVETDAQMDFLRHAHCEEAQGYRFSKPVSPEEIPGLLRARSL

Sequences:

>Translated_765_residues
MPKPSARRWESTDALSAETRRIVAATEAMMASTAHHLSDGIENLRLKTIVHELPDFLYVKDRDSRFVFANTVTASSLGLE
SADLLTGKRDFDLFDFETALHHFDIEQQIMATGQACIDMEESYVLPGGKRPICRLTSKIPLRNDRGEVIGLIGVSRDITE
RKRQEDLHREQANLLEMIARNEPLPMILEALVLMIEAQLTGIDGSVLLLNGEGTRLYHGAAPNLPGGYSRLIDGVTIGPK
VGSCGTAAWRGQTVIVEDVMSDPLWEDFRALVAPFGFRSCWSTPIVTSQNNVLGTFALYSREVRRPTEHEIKLVALATHI
AGIAIERKRVDDRIHFMAHHDDLTGLPNRAFLKERLANILDQARRHTRKVTVAYIDLDNFKDINDGRGHAAGDEVLKETA
ARMANSIRASDMVVRLGGDEFLVVLVHQSSHDAGITRRLRELQKAINRPIPSEGGEITVTSSIGVAAFPFDGATSEELLA
NADRAMYRAKELGRNTLQHHDGGGTPVGMPLGEQEELHQAITGDQLFLQYQPQVDVATGRITGIEALVRWNHPAKGRVPP
VNFIPLAEETGLIVPLGLWVLNEACRQARQWQDMGLTPLTIAVNVSAKQFADPDFASHVAEALERHRLQARWLELEVTES
VVMQDAERALAMMESLRALGVRLSIDDFGSGYSSLAALKTFPFDRLKMDRSLVEALPGDKTAVAIASAVISLAQTLKLSV
LAEGVETDAQMDFLRHAHCEEAQGYRFSKPVSPEEIPGLLRARSL
>Mature_764_residues
PKPSARRWESTDALSAETRRIVAATEAMMASTAHHLSDGIENLRLKTIVHELPDFLYVKDRDSRFVFANTVTASSLGLES
ADLLTGKRDFDLFDFETALHHFDIEQQIMATGQACIDMEESYVLPGGKRPICRLTSKIPLRNDRGEVIGLIGVSRDITER
KRQEDLHREQANLLEMIARNEPLPMILEALVLMIEAQLTGIDGSVLLLNGEGTRLYHGAAPNLPGGYSRLIDGVTIGPKV
GSCGTAAWRGQTVIVEDVMSDPLWEDFRALVAPFGFRSCWSTPIVTSQNNVLGTFALYSREVRRPTEHEIKLVALATHIA
GIAIERKRVDDRIHFMAHHDDLTGLPNRAFLKERLANILDQARRHTRKVTVAYIDLDNFKDINDGRGHAAGDEVLKETAA
RMANSIRASDMVVRLGGDEFLVVLVHQSSHDAGITRRLRELQKAINRPIPSEGGEITVTSSIGVAAFPFDGATSEELLAN
ADRAMYRAKELGRNTLQHHDGGGTPVGMPLGEQEELHQAITGDQLFLQYQPQVDVATGRITGIEALVRWNHPAKGRVPPV
NFIPLAEETGLIVPLGLWVLNEACRQARQWQDMGLTPLTIAVNVSAKQFADPDFASHVAEALERHRLQARWLELEVTESV
VMQDAERALAMMESLRALGVRLSIDDFGSGYSSLAALKTFPFDRLKMDRSLVEALPGDKTAVAIASAVISLAQTLKLSVL
AEGVETDAQMDFLRHAHCEEAQGYRFSKPVSPEEIPGLLRARSL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=459, Percent_Identity=35.9477124183007, Blast_Score=284, Evalue=2e-77,
Organism=Escherichia coli, GI87081921, Length=453, Percent_Identity=35.0993377483444, Blast_Score=273, Evalue=2e-74,
Organism=Escherichia coli, GI226510982, Length=421, Percent_Identity=34.4418052256532, Blast_Score=210, Evalue=3e-55,
Organism=Escherichia coli, GI87081845, Length=239, Percent_Identity=35.1464435146443, Blast_Score=148, Evalue=2e-36,
Organism=Escherichia coli, GI1790496, Length=249, Percent_Identity=34.136546184739, Blast_Score=145, Evalue=7e-36,
Organism=Escherichia coli, GI1788502, Length=239, Percent_Identity=33.0543933054393, Blast_Score=139, Evalue=6e-34,
Organism=Escherichia coli, GI1787055, Length=237, Percent_Identity=35.0210970464135, Blast_Score=133, Evalue=5e-32,
Organism=Escherichia coli, GI1786507, Length=221, Percent_Identity=34.3891402714932, Blast_Score=130, Evalue=4e-31,
Organism=Escherichia coli, GI87081743, Length=240, Percent_Identity=32.0833333333333, Blast_Score=125, Evalue=9e-30,
Organism=Escherichia coli, GI87081980, Length=246, Percent_Identity=32.9268292682927, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1786584, Length=170, Percent_Identity=37.0588235294118, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI1788849, Length=482, Percent_Identity=22.8215767634855, Blast_Score=103, Evalue=5e-23,
Organism=Escherichia coli, GI1788381, Length=420, Percent_Identity=25.952380952381, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI87081977, Length=338, Percent_Identity=26.9230769230769, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI87082007, Length=164, Percent_Identity=36.5853658536585, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI145693134, Length=159, Percent_Identity=37.1069182389937, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1787262, Length=210, Percent_Identity=30, Blast_Score=87, Evalue=5e-18,
Organism=Escherichia coli, GI1788956, Length=155, Percent_Identity=38.7096774193548, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87082096, Length=446, Percent_Identity=23.3183856502242, Blast_Score=84, Evalue=5e-17,
Organism=Escherichia coli, GI87081881, Length=177, Percent_Identity=36.1581920903955, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787816, Length=157, Percent_Identity=35.6687898089172, Blast_Score=82, Evalue=2e-16,
Organism=Escherichia coli, GI1787802, Length=190, Percent_Identity=30.5263157894737, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787410, Length=292, Percent_Identity=25.6849315068493, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081974, Length=129, Percent_Identity=35.6589147286822, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 84444; Mature: 84313

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKPSARRWESTDALSAETRRIVAATEAMMASTAHHLSDGIENLRLKTIVHELPDFLYVK
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
DRDSRFVFANTVTASSLGLESADLLTGKRDFDLFDFETALHHFDIEQQIMATGQACIDME
CCCCEEEEEEEEEHHHCCCCHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHCCHHHEECC
ESYVLPGGKRPICRLTSKIPLRNDRGEVIGLIGVSRDITERKRQEDLHREQANLLEMIAR
CCEECCCCCCCHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHC
NEPLPMILEALVLMIEAQLTGIDGSVLLLNGEGTRLYHGAAPNLPGGYSRLIDGVTIGPK
CCCHHHHHHHHHHHHHHHEECCCCEEEEEECCCCEEEECCCCCCCCHHHHHHCCCEECCC
VGSCGTAAWRGQTVIVEDVMSDPLWEDFRALVAPFGFRSCWSTPIVTSQNNVLGTFALYS
CCCCCCCCCCCCEEEEHHHHCCCHHHHHHHHHCCCCCHHHCCCCCEECCCCCEEHHHHHH
REVRRPTEHEIKLVALATHIAGIAIERKRVDDRIHFMAHHDDLTGLPNRAFLKERLANIL
HHHCCCCHHCEEEEEEHHHHHHHHEEHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHH
DQARRHTRKVTVAYIDLDNFKDINDGRGHAAGDEVLKETAARMANSIRASDMVVRLGGDE
HHHHHHHCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCE
FLVVLVHQSSHDAGITRRLRELQKAINRPIPSEGGEITVTSSIGVAAFPFDGATSEELLA
EEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEECCCCCCHHHHHH
NADRAMYRAKELGRNTLQHHDGGGTPVGMPLGEQEELHQAITGDQLFLQYQPQVDVATGR
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCEEECCCC
ITGIEALVRWNHPAKGRVPPVNFIPLAEETGLIVPLGLWVLNEACRQARQWQDMGLTPLT
HHHHHHHEECCCCCCCCCCCCCEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCEEE
IAVNVSAKQFADPDFASHVAEALERHRLQARWLELEVTESVVMQDAERALAMMESLRALG
EEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHC
VRLSIDDFGSGYSSLAALKTFPFDRLKMDRSLVEALPGDKTAVAIASAVISLAQTLKLSV
CEEEEHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LAEGVETDAQMDFLRHAHCEEAQGYRFSKPVSPEEIPGLLRARSL
HHHCCCCHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
PKPSARRWESTDALSAETRRIVAATEAMMASTAHHLSDGIENLRLKTIVHELPDFLYVK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
DRDSRFVFANTVTASSLGLESADLLTGKRDFDLFDFETALHHFDIEQQIMATGQACIDME
CCCCEEEEEEEEEHHHCCCCHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHCCHHHEECC
ESYVLPGGKRPICRLTSKIPLRNDRGEVIGLIGVSRDITERKRQEDLHREQANLLEMIAR
CCEECCCCCCCHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHC
NEPLPMILEALVLMIEAQLTGIDGSVLLLNGEGTRLYHGAAPNLPGGYSRLIDGVTIGPK
CCCHHHHHHHHHHHHHHHEECCCCEEEEEECCCCEEEECCCCCCCCHHHHHHCCCEECCC
VGSCGTAAWRGQTVIVEDVMSDPLWEDFRALVAPFGFRSCWSTPIVTSQNNVLGTFALYS
CCCCCCCCCCCCEEEEHHHHCCCHHHHHHHHHCCCCCHHHCCCCCEECCCCCEEHHHHHH
REVRRPTEHEIKLVALATHIAGIAIERKRVDDRIHFMAHHDDLTGLPNRAFLKERLANIL
HHHCCCCHHCEEEEEEHHHHHHHHEEHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHH
DQARRHTRKVTVAYIDLDNFKDINDGRGHAAGDEVLKETAARMANSIRASDMVVRLGGDE
HHHHHHHCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCE
FLVVLVHQSSHDAGITRRLRELQKAINRPIPSEGGEITVTSSIGVAAFPFDGATSEELLA
EEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEECCCCCCHHHHHH
NADRAMYRAKELGRNTLQHHDGGGTPVGMPLGEQEELHQAITGDQLFLQYQPQVDVATGR
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCEEECCCC
ITGIEALVRWNHPAKGRVPPVNFIPLAEETGLIVPLGLWVLNEACRQARQWQDMGLTPLT
HHHHHHHEECCCCCCCCCCCCCEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCEEE
IAVNVSAKQFADPDFASHVAEALERHRLQARWLELEVTESVVMQDAERALAMMESLRALG
EEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHC
VRLSIDDFGSGYSSLAALKTFPFDRLKMDRSLVEALPGDKTAVAIASAVISLAQTLKLSV
CEEEEHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LAEGVETDAQMDFLRHAHCEEAQGYRFSKPVSPEEIPGLLRARSL
HHHCCCCHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]