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The map label for this gene is ymcB [H]

Identifier: 209396475

GI number: 209396475

Start: 1232109

End: 1232855

Strand: Reverse

Name: ymcB [H]

Synonym: ECH74115_1221

Alternate gene names: 209396475

Gene position: 1232855-1232109 (Counterclockwise)

Preceding gene: 209399944

Following gene: 209395798

Centisome position: 22.13

GC content: 52.07

Gene sequence:

>747_bases
ATGAATAAATTACAGTCGTATTTCATTGCCAGCGTACTTTACGTAATGACACCCCATGCCTTTGCGCAAGGAACGGTGAC
TATTTATCTGCCTGGCGAACAACAGACACTTTCCGTTGGCCCCGTGGAGAATGTTGCCCAGTTAGTGACACAACCGCAAC
TGCGCGATCGCCTCTGGTGGCCTGGTGCCCTGCTGACCGACTCCGCGGTGAAAGCTAAAGCGCTTAAAGACTACCAACAT
GTCATGGCACAGCTTGCTTCCTGGGAAGCAGAAGCTGACGACGATGTGGCGGCAACGATTAAATCCGTGCGCCAGCAGTT
ACTCAATCTCAATATTACTGGTCGCTTACCGGTCAAACTGGACCCTGATTTTGTACGAGTGGATGAGAACAGCAATCCCC
CGCTGGTCGGGAACTATACGCTCTATACCGTACAGCGCCCGGTGACTATTACTCTTCTGGGTGCGGTTTCTGGGGCTGGG
CAATTGCCCTGGCAGGCAGGCCGTAGCGTTACCGATTATCTGCAAGATCACCCCCGTCTTGCAGGCGCGGACAAGAATAA
CGTTATCGTGATTACGCCTGAGGGTGAGACTGTCGTCGCCCCTGTTGCCCTGTGGAATAAAAGACATGTGGAACCACCGC
CTGGCAGCCAGCTTTGGTTAGGCTTTTCTGCGCATGTACTGCCCGAAAAATATGCTGATTTAAATGACCAGATTGTGTCT
GTTTTAACGCAACGTGTTCCTGACTGA

Upstream 100 bases:

>100_bases
CATTCTGGGTCGATTCGGCTACTGGCCAGGTTCGTCAAAGTCGGCAAATGTTAGGCGCAGGGGTTATTCCCGTAGAAATG
ACGTTTCTTAAACCCGCACC

Downstream 100 bases:

>100_bases
TGAAGAAGAATTCTTATCTTTTAAGCTGCCTGGCCATTGCCGTCTCCAGTGCCTGTCATGCTGAAGTATTAACCTACCCG
GATCCGCTGGGTTCGTCGCA

Product: group 4 capsule (G4C) polysaccharide, YmcB

Products: NA

Alternate protein names: Group 4 capsule protein C homolog [H]

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPGEQQTLSVGPVENVAQLVTQPQLRDRLWWPGALLTDSAVKAKALKDYQH
VMAQLASWEAEADDDVAATIKSVRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGNYTLYTVQRPVTITLLGAVSGAG
QLPWQAGRSVTDYLQDHPRLAGADKNNVIVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSAHVLPEKYADLNDQIVS
VLTQRVPD

Sequences:

>Translated_248_residues
MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPGEQQTLSVGPVENVAQLVTQPQLRDRLWWPGALLTDSAVKAKALKDYQH
VMAQLASWEAEADDDVAATIKSVRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGNYTLYTVQRPVTITLLGAVSGAG
QLPWQAGRSVTDYLQDHPRLAGADKNNVIVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSAHVLPEKYADLNDQIVS
VLTQRVPD
>Mature_248_residues
MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPGEQQTLSVGPVENVAQLVTQPQLRDRLWWPGALLTDSAVKAKALKDYQH
VMAQLASWEAEADDDVAATIKSVRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGNYTLYTVQRPVTITLLGAVSGAG
QLPWQAGRSVTDYLQDHPRLAGADKNNVIVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSAHVLPEKYADLNDQIVS
VLTQRVPD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjbG [H]

Homologues:

Organism=Escherichia coli, GI1787220, Length=248, Percent_Identity=98.3870967741936, Blast_Score=496, Evalue=1e-142,
Organism=Escherichia coli, GI1790460, Length=244, Percent_Identity=42.2131147540984, Blast_Score=185, Evalue=2e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010425 [H]

Pfam domain/function: PF06251 DUF1017 [H]

EC number: NA

Molecular weight: Translated: 27277; Mature: 27277

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPGEQQTLSVGPVENVAQLVTQPQLRDRLWW
CCHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCEEECCCHHHHHHHHCCHHHHHHCCC
PGALLTDSAVKAKALKDYQHVMAQLASWEAEADDDVAATIKSVRQQLLNLNITGRLPVKL
CCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEE
DPDFVRVDENSNPPLVGNYTLYTVQRPVTITLLGAVSGAGQLPWQAGRSVTDYLQDHPRL
CCCEEEECCCCCCCEEECEEEEEECCCEEEEEEEECCCCCCCCHHHCCCHHHHHHCCCCC
AGADKNNVIVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSAHVLPEKYADLNDQIVS
CCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCHHHCCHHHHHHH
VLTQRVPD
HHHHHCCC
>Mature Secondary Structure
MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPGEQQTLSVGPVENVAQLVTQPQLRDRLWW
CCHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCEEECCCHHHHHHHHCCHHHHHHCCC
PGALLTDSAVKAKALKDYQHVMAQLASWEAEADDDVAATIKSVRQQLLNLNITGRLPVKL
CCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEE
DPDFVRVDENSNPPLVGNYTLYTVQRPVTITLLGAVSGAGQLPWQAGRSVTDYLQDHPRL
CCCEEEECCCCCCCEEECEEEEEECCCEEEEEEEECCCCCCCCHHHCCCHHHHHHCCCCC
AGADKNNVIVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSAHVLPEKYADLNDQIVS
CCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCHHHCCHHHHHHH
VLTQRVPD
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]