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The map label for this gene is ymcC [H]

Identifier: 209399944

GI number: 209399944

Start: 1232852

End: 1233496

Strand: Reverse

Name: ymcC [H]

Synonym: ECH74115_1222

Alternate gene names: 209399944

Gene position: 1233496-1232852 (Counterclockwise)

Preceding gene: 209400547

Following gene: 209396475

Centisome position: 22.14

GC content: 48.22

Gene sequence:

>645_bases
GTGCGCCCTCTTATTTTATCGATTTTCGCACTATTTCTTGCGGGATGTACGCACAGCCAGCAAAGTATGGTCGATACATT
TCGCGCCAGCCTTTTCGATAATCAGGATATCACCGTAGCGGATCAGCAGATCCAGGCGTTGCCTTATTCCACGATGTATT
TACGCCTTAATGAAGGGCAACGAATCTTTGTGGTACTGGGATATATAGAACAAGAACAAAGCAAATGGTTATCCCAGGAT
AACGCCATGCTGGTTACCCACAATGGACGTCTTTTAAAGACCGTCAAACTTAATAATAATCTGCTGGAAGTGACAAATTC
CGGGCAGGACCCTCTGCGTAACGCGCTGGCAATAAAAGACGGCAGCCGCTGGACGCGCGATATTCTCTGGAGTGAAGACA
ACCATTTTCGCTCTGCGACCCTGAGTTCCACTTTTTCCTTTGCTGGATTAGAGACGCTGCATATTGCGGGTCGCGATGTG
CTGTGTAATGTCTGGCAGGAAGAGGTGACTTCCACGCTACCAGAAAAACAGTGGCAAAACACATTCTGGGTCGATTCGGC
TACTGGCCAGGTTCGTCAAAGTCGGCAAATGTTAGGCGCAGGGGTTATTCCCGTAGAAATGACGTTTCTTAAACCCGCAC
CATGA

Upstream 100 bases:

>100_bases
TTAAACGCGTCGAAATTAAAGTTAAATAATACCCGGTTGCGATATTCGTACCGGGCTTTAGAGATTTGCATTTTTTTAAT
TAACCTTTCAAGGATTAAAG

Downstream 100 bases:

>100_bases
ATAAATTACAGTCGTATTTCATTGCCAGCGTACTTTACGTAATGACACCCCATGCCTTTGCGCAAGGAACGGTGACTATT
TATCTGCCTGGCGAACAACA

Product: group 4 capsule (G4C) polysaccharide, lipoprotein YmcC

Products: NA

Alternate protein names: Group 4 capsule protein B homolog [H]

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVADQQIQALPYSTMYLRLNEGQRIFVVLGYIEQEQSKWLSQD
NAMLVTHNGRLLKTVKLNNNLLEVTNSGQDPLRNALAIKDGSRWTRDILWSEDNHFRSATLSSTFSFAGLETLHIAGRDV
LCNVWQEEVTSTLPEKQWQNTFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP

Sequences:

>Translated_214_residues
MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVADQQIQALPYSTMYLRLNEGQRIFVVLGYIEQEQSKWLSQD
NAMLVTHNGRLLKTVKLNNNLLEVTNSGQDPLRNALAIKDGSRWTRDILWSEDNHFRSATLSSTFSFAGLETLHIAGRDV
LCNVWQEEVTSTLPEKQWQNTFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP
>Mature_214_residues
MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVADQQIQALPYSTMYLRLNEGQRIFVVLGYIEQEQSKWLSQD
NAMLVTHNGRLLKTVKLNNNLLEVTNSGQDPLRNALAIKDGSRWTRDILWSEDNHFRSATLSSTFSFAGLETLHIAGRDV
LCNVWQEEVTSTLPEKQWQNTFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjbF [H]

Homologues:

Organism=Escherichia coli, GI1787221, Length=214, Percent_Identity=98.5981308411215, Blast_Score=437, Evalue=1e-124,
Organism=Escherichia coli, GI87082360, Length=212, Percent_Identity=38.6792452830189, Blast_Score=160, Evalue=4e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021308 [H]

Pfam domain/function: PF11102 DUF2886 [H]

EC number: NA

Molecular weight: Translated: 24249; Mature: 24249

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVADQQIQALPYSTMYLRLNEGQ
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHCCCEEEEEEECCCC
RIFVVLGYIEQEQSKWLSQDNAMLVTHNGRLLKTVKLNNNLLEVTNSGQDPLRNALAIKD
EEEEEEEEHHHHHHHHHCCCCCEEEEECCEEEEEEEECCCEEEECCCCCCHHHHHEEECC
GSRWTRDILWSEDNHFRSATLSSTFSFAGLETLHIAGRDVLCNVWQEEVTSTLPEKQWQN
CCCHHHHHCCCCCCCEEEHHHHCCHHHCCCEEEEECCCHHHHHHHHHHHHHHCCHHHHCC
TFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP
EEEEECCCHHHHHHHHHHCCCCCEEEEEEECCCC
>Mature Secondary Structure
MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVADQQIQALPYSTMYLRLNEGQ
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHCCCEEEEEEECCCC
RIFVVLGYIEQEQSKWLSQDNAMLVTHNGRLLKTVKLNNNLLEVTNSGQDPLRNALAIKD
EEEEEEEEHHHHHHHHHCCCCCEEEEECCEEEEEEEECCCEEEECCCCCCHHHHHEEECC
GSRWTRDILWSEDNHFRSATLSSTFSFAGLETLHIAGRDVLCNVWQEEVTSTLPEKQWQN
CCCHHHHHCCCCCCCEEEHHHHCCHHHCCCEEEEECCCHHHHHHHHHHHHHHCCHHHHCC
TFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP
EEEEECCCHHHHHHHHHHCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]