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The map label for this gene is gerKA [H]

Identifier: 20808743

GI number: 20808743

Start: 2267627

End: 2269162

Strand: Reverse

Name: gerKA [H]

Synonym: TTE2379

Alternate gene names: 20808743

Gene position: 2269162-2267627 (Counterclockwise)

Preceding gene: 20808745

Following gene: 20808742

Centisome position: 84.37

GC content: 40.95

Gene sequence:

>1536_bases
ATGGCTCGCAAACTGCCGGACCCCCAGTACATTCGAGACAATTACGAGTACATGTATTTGACAAAAGATTTAAAAGAAAA
TACTTACATCTTTAACACGCTTTTAGCTGGCAATAACGATGTGGTTTTTAGAAATATAAAAATTGGGAGGAGAAAGATAC
CTGCCTGTCTTATTTACATAGATGGATTGGCAGACAAGTCCTTAGTTGCCCACAATGTTTTATTTCCCCTCATGATTGAG
ACTCAGAAAATTGATGAAAACCCAGGAACAGGAGACGAATTTTTTGAAAGGGTAAGAGAACTCTTTGTCACTATAGGAGA
GGTGAATGTAAAAGACAAGATTGGCGATGTGATGGATGACCTGCTGTCTGGAGAAACTGTCCTTTTAATCGATGGAATTA
AAAAAGCATTAATCCTTTCCACAAAAGGTTGGGAAGGGAGAAATATAAGCGAATCTACTACTGAGTCCTATGTGAGGGGA
CCTAAAGAGGCATTTGTTGAAACCTTAAGGATTAACACTTCTATGTTAAGAAGGAGGATAAAGCACCCTGATTTTGTGAT
TGAGGACATGAAAATAGGAAAATACTCAAAGACAGATGTGGCAATCGCTTACATAAAATCAATCGCAGATGATAAAGTTC
TTCAAGAAGTCAAAAAAAGGCTTAAGAAGATACAGATTGATGGGATAATTGACAGCGGATATATTGAGGAATTTATAGAA
GATAATCCGTTTTCTCCTTTTCCCCAGATCGCTCATTCGGAAAAGCCAGACAGGATAGCCGCAGAGATTTTAGAGGGAAA
AGTAGCTATAATTGTGGACGGTTCACCTTTTGTATTGACTGTTCCGGCTGTATTTGCACAATTTTTTCAGGCAGGAGAAG
ACTACTACGAAAGATATTTTTTGTCTTCTGCCCTCAGAGTATTGAGGATAATAGCCATGATAACAGCTCTCCTTTTTCCT
TCTATATACATAGCAGAAACCACATTTCATCAGGAGATGATACCAACGCAGTTGGCCATATCAATTGCTGCCCAGAGGGA
AGGAGTTCCTTTTCCGGCCCTTTTAGAAGCTTTGTTTATGGAGGTCACCTTTGAAATACTGAGGGAAGCAGGAATCAGGC
TTCCAATGCAGGTAGGTCAAGCAGTGAGCATCGTCGGGGGCCTTGTGATAGGGCAGGCAGCTGTTCAAGCTGGCCTTGTC
TCCCCTGCCATGGTCATTGTAGTGGCTATGACAGGTATTGCTTCCTTTGCCATACCTGCCTTTAATGTAGCTATAACTTT
TAGGCTTCTTAGGTTTATCATAATGATAGCGGCAGGGACCTTGGGCTTTTTTGGGATAATAATGGTGATAATGATGGTGC
TGGCTCACATGGCCTCTTTAGAATCTTTTGGGGTTCCCTATCTTTCACCAATAACCCCGTGCAGATCTCAGGAACTGACT
GATGTGTTTATGAGAGTACCGTGGTGGGCAAAAATACTAAGGCCTAGAACTATACAGAGGAAAAACATAATAAGGCAGGA
GGATAAAAGAGGATAA

Upstream 100 bases:

>100_bases
TAAGCATATCCCAGCCCTCTGTGCCTTTTTTTATATTATTTGCATCAAAAAAACATAATATTCTCCAAAAAATGAAATAA
TAATCTTTGGAGGTGAAAAA

Downstream 100 bases:

>100_bases
TGAGAGGGAAAAAAGTTGTAGCGATGATATTAATTCTTTTGACGACTTTACTCGTTATTGAGGGATGCTGGGATAAAAGA
GAGATAAATCAGCTGGCCTT

Product: germination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 511; Mature: 510

Protein sequence:

>511_residues
MARKLPDPQYIRDNYEYMYLTKDLKENTYIFNTLLAGNNDVVFRNIKIGRRKIPACLIYIDGLADKSLVAHNVLFPLMIE
TQKIDENPGTGDEFFERVRELFVTIGEVNVKDKIGDVMDDLLSGETVLLIDGIKKALILSTKGWEGRNISESTTESYVRG
PKEAFVETLRINTSMLRRRIKHPDFVIEDMKIGKYSKTDVAIAYIKSIADDKVLQEVKKRLKKIQIDGIIDSGYIEEFIE
DNPFSPFPQIAHSEKPDRIAAEILEGKVAIIVDGSPFVLTVPAVFAQFFQAGEDYYERYFLSSALRVLRIIAMITALLFP
SIYIAETTFHQEMIPTQLAISIAAQREGVPFPALLEALFMEVTFEILREAGIRLPMQVGQAVSIVGGLVIGQAAVQAGLV
SPAMVIVVAMTGIASFAIPAFNVAITFRLLRFIIMIAAGTLGFFGIIMVIMMVLAHMASLESFGVPYLSPITPCRSQELT
DVFMRVPWWAKILRPRTIQRKNIIRQEDKRG

Sequences:

>Translated_511_residues
MARKLPDPQYIRDNYEYMYLTKDLKENTYIFNTLLAGNNDVVFRNIKIGRRKIPACLIYIDGLADKSLVAHNVLFPLMIE
TQKIDENPGTGDEFFERVRELFVTIGEVNVKDKIGDVMDDLLSGETVLLIDGIKKALILSTKGWEGRNISESTTESYVRG
PKEAFVETLRINTSMLRRRIKHPDFVIEDMKIGKYSKTDVAIAYIKSIADDKVLQEVKKRLKKIQIDGIIDSGYIEEFIE
DNPFSPFPQIAHSEKPDRIAAEILEGKVAIIVDGSPFVLTVPAVFAQFFQAGEDYYERYFLSSALRVLRIIAMITALLFP
SIYIAETTFHQEMIPTQLAISIAAQREGVPFPALLEALFMEVTFEILREAGIRLPMQVGQAVSIVGGLVIGQAAVQAGLV
SPAMVIVVAMTGIASFAIPAFNVAITFRLLRFIIMIAAGTLGFFGIIMVIMMVLAHMASLESFGVPYLSPITPCRSQELT
DVFMRVPWWAKILRPRTIQRKNIIRQEDKRG
>Mature_510_residues
ARKLPDPQYIRDNYEYMYLTKDLKENTYIFNTLLAGNNDVVFRNIKIGRRKIPACLIYIDGLADKSLVAHNVLFPLMIET
QKIDENPGTGDEFFERVRELFVTIGEVNVKDKIGDVMDDLLSGETVLLIDGIKKALILSTKGWEGRNISESTTESYVRGP
KEAFVETLRINTSMLRRRIKHPDFVIEDMKIGKYSKTDVAIAYIKSIADDKVLQEVKKRLKKIQIDGIIDSGYIEEFIED
NPFSPFPQIAHSEKPDRIAAEILEGKVAIIVDGSPFVLTVPAVFAQFFQAGEDYYERYFLSSALRVLRIIAMITALLFPS
IYIAETTFHQEMIPTQLAISIAAQREGVPFPALLEALFMEVTFEILREAGIRLPMQVGQAVSIVGGLVIGQAAVQAGLVS
PAMVIVVAMTGIASFAIPAFNVAITFRLLRFIIMIAAGTLGFFGIIMVIMMVLAHMASLESFGVPYLSPITPCRSQELTD
VFMRVPWWAKILRPRTIQRKNIIRQEDKRG

Specific function: Involved in the germination response to the combination of glucose, fructose, L-asparagine, and KCl [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 57413; Mature: 57282

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKLPDPQYIRDNYEYMYLTKDLKENTYIFNTLLAGNNDVVFRNIKIGRRKIPACLIYI
CCCCCCCCHHHHCCCCEEEEECCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCEEEEEE
DGLADKSLVAHNVLFPLMIETQKIDENPGTGDEFFERVRELFVTIGEVNVKDKIGDVMDD
ECCCCCHHHHHHHHHHHHEEHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LLSGETVLLIDGIKKALILSTKGWEGRNISESTTESYVRGPKEAFVETLRINTSMLRRRI
HHCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHH
KHPDFVIEDMKIGKYSKTDVAIAYIKSIADDKVLQEVKKRLKKIQIDGIIDSGYIEEFIE
CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEECHHHHHHHHC
DNPFSPFPQIAHSEKPDRIAAEILEGKVAIIVDGSPFVLTVPAVFAQFFQAGEDYYERYF
CCCCCCCCHHHCCCCCHHHHHHHHCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHH
LSSALRVLRIIAMITALLFPSIYIAETTFHQEMIPTQLAISIAAQREGVPFPALLEALFM
HHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
EVTFEILREAGIRLPMQVGQAVSIVGGLVIGQAAVQAGLVSPAMVIVVAMTGIASFAIPA
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FNVAITFRLLRFIIMIAAGTLGFFGIIMVIMMVLAHMASLESFGVPYLSPITPCRSQELT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
DVFMRVPWWAKILRPRTIQRKNIIRQEDKRG
HHHHHCCHHHHHHCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ARKLPDPQYIRDNYEYMYLTKDLKENTYIFNTLLAGNNDVVFRNIKIGRRKIPACLIYI
CCCCCCCHHHHCCCCEEEEECCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCEEEEEE
DGLADKSLVAHNVLFPLMIETQKIDENPGTGDEFFERVRELFVTIGEVNVKDKIGDVMDD
ECCCCCHHHHHHHHHHHHEEHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LLSGETVLLIDGIKKALILSTKGWEGRNISESTTESYVRGPKEAFVETLRINTSMLRRRI
HHCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHH
KHPDFVIEDMKIGKYSKTDVAIAYIKSIADDKVLQEVKKRLKKIQIDGIIDSGYIEEFIE
CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEECHHHHHHHHC
DNPFSPFPQIAHSEKPDRIAAEILEGKVAIIVDGSPFVLTVPAVFAQFFQAGEDYYERYF
CCCCCCCCHHHCCCCCHHHHHHHHCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHH
LSSALRVLRIIAMITALLFPSIYIAETTFHQEMIPTQLAISIAAQREGVPFPALLEALFM
HHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
EVTFEILREAGIRLPMQVGQAVSIVGGLVIGQAAVQAGLVSPAMVIVVAMTGIASFAIPA
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FNVAITFRLLRFIIMIAAGTLGFFGIIMVIMMVLAHMASLESFGVPYLSPITPCRSQELT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
DVFMRVPWWAKILRPRTIQRKNIIRQEDKRG
HHHHHCCHHHHHHCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]