Click here to switch to the map view.

The map label for this gene is mrnC [H]

Identifier: 20808680

GI number: 20808680

Start: 2195207

End: 2195617

Strand: Reverse

Name: mrnC [H]

Synonym: TTE2314

Alternate gene names: 20808680

Gene position: 2195617-2195207 (Counterclockwise)

Preceding gene: 20808681

Following gene: 20808679

Centisome position: 81.64

GC content: 38.69

Gene sequence:

>411_bases
ATGGAAAAGGATAAGATGATTCTTGTAAAGGAAAAGGGGGTTTTAGACTTATCCCCCCTTGTTTTGGCTTTCATTGGAGA
TGCGGTTTACAGCCTTTATGTCAGAACTAAGATTGTGGAGAAAGGGAATATGAAATTGGCTCATTTAAATGAGCAAACTG
TGAAGTACGTTAAGGCATCTTCACAGGCTAGGTCTCTTGAGCGAATTTACGACCTTCTCACTGAAGAAGAAAAGGAAATT
GTGAGAAGGGGAAGAAATGCCAAAGCTTCTACAGTTCCAAAAGGAGCAAGTGTTAAAGAGTATAAGTATGCCACTGCCTT
TGAAGCATTAGTGGGATATTTGTACCTTTTAGAAAGATTTGATAGGCTTTACTTTCTTTTGAGCCTTTCTATGGAATACA
CGGAAGAATAG

Upstream 100 bases:

>100_bases
AAAAGGCCAGAAAAGAGAAAAACTGGAAGTTAGCTGATGAGATAAGGGATAAATTGAAAGAAAGAGGTATAATTTTAGAG
GATACGCCAGAGGGAGTAAG

Downstream 100 bases:

>100_bases
GTGAAAATTATGAGAAATGGCGATATTATATATGGAAGAAACCCTGTTATAGAAGCGATAAGAAGCGGTAAGGAAATAGA
AAAGATATACGTGTCCAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MEKDKMILVKEKGVLDLSPLVLAFIGDAVYSLYVRTKIVEKGNMKLAHLNEQTVKYVKASSQARSLERIYDLLTEEEKEI
VRRGRNAKASTVPKGASVKEYKYATAFEALVGYLYLLERFDRLYFLLSLSMEYTEE

Sequences:

>Translated_136_residues
MEKDKMILVKEKGVLDLSPLVLAFIGDAVYSLYVRTKIVEKGNMKLAHLNEQTVKYVKASSQARSLERIYDLLTEEEKEI
VRRGRNAKASTVPKGASVKEYKYATAFEALVGYLYLLERFDRLYFLLSLSMEYTEE
>Mature_136_residues
MEKDKMILVKEKGVLDLSPLVLAFIGDAVYSLYVRTKIVEKGNMKLAHLNEQTVKYVKASSQARSLERIYDLLTEEEKEI
VRRGRNAKASTVPKGASVKEYKYATAFEALVGYLYLLERFDRLYFLLSLSMEYTEE

Specific function: Might be an RNase involved in RNA processing [H]

COG id: COG1939

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase III domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000999
- InterPro:   IPR008226 [H]

Pfam domain/function: PF00636 Ribonuclease_3 [H]

EC number: NA

Molecular weight: Translated: 15669; Mature: 15669

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKDKMILVKEKGVLDLSPLVLAFIGDAVYSLYVRTKIVEKGNMKLAHLNEQTVKYVKAS
CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH
SQARSLERIYDLLTEEEKEIVRRGRNAKASTVPKGASVKEYKYATAFEALVGYLYLLERF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
DRLYFLLSLSMEYTEE
HHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEKDKMILVKEKGVLDLSPLVLAFIGDAVYSLYVRTKIVEKGNMKLAHLNEQTVKYVKAS
CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH
SQARSLERIYDLLTEEEKEIVRRGRNAKASTVPKGASVKEYKYATAFEALVGYLYLLERF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
DRLYFLLSLSMEYTEE
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]