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The map label for this gene is Hfq [H]

Identifier: 20807807

GI number: 20807807

Start: 1343717

End: 1343977

Strand: Direct

Name: Hfq [H]

Synonym: TTE1360

Alternate gene names: 20807807

Gene position: 1343717-1343977 (Clockwise)

Preceding gene: 20807806

Following gene: 20807808

Centisome position: 49.96

GC content: 36.02

Gene sequence:

>261_bases
ATGGCAAGTTCAAAAGCAGCTATTAATTTACAAGACATCTTTTTAAATCAAGTGAGAAAGGAGCATGTACCAGTCACAGT
ATACCTTATAAATGGGTTTCAGCTCAAAGGTACAGTGAAAGGATTTGACAATTTTACAGTTGTGTTAGAATCTGAAAGCA
AACAGCAGCTTCTAATTTACAAACATGCGATTTCTACTATCTCTCCTCAAAAGCCTGTCATCTTCTCAGGTTCTGAGAAA
GATGATAAGAAGGAGGAGTAA

Upstream 100 bases:

>100_bases
TATGAGGAACTTCGAGAAAATATTTTTGAATACTTGGCAGGAAAATTGAAATTTTGATAGAATATAACTAAATGATACAT
ATTAAAGAAGGGGGATAAAG

Downstream 100 bases:

>100_bases
GATCAAAAAAACAGTATTAGGCCTAACTAATACTGTTTTTTTGAAATAATTTAAAAAACAGGGGAGTTTTAAAGGATGAA
AATTGGCTTTATAGGTGCCG

Product: uncharacterized ACR, host factor I protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 86; Mature: 85

Protein sequence:

>86_residues
MASSKAAINLQDIFLNQVRKEHVPVTVYLINGFQLKGTVKGFDNFTVVLESESKQQLLIYKHAISTISPQKPVIFSGSEK
DDKKEE

Sequences:

>Translated_86_residues
MASSKAAINLQDIFLNQVRKEHVPVTVYLINGFQLKGTVKGFDNFTVVLESESKQQLLIYKHAISTISPQKPVIFSGSEK
DDKKEE
>Mature_85_residues
ASSKAAINLQDIFLNQVRKEHVPVTVYLINGFQLKGTVKGFDNFTVVLESESKQQLLIYKHAISTISPQKPVIFSGSEKD
DKKEE

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=64, Percent_Identity=50, Blast_Score=77, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 9666; Mature: 9535

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSKAAINLQDIFLNQVRKEHVPVTVYLINGFQLKGTVKGFDNFTVVLESESKQQLLIY
CCCCCCEEEHHHHHHHHHHHCCCCEEEEEECCEEEEEEECCCCCEEEEEECCCCCEEEEE
KHAISTISPQKPVIFSGSEKDDKKEE
EEHHHCCCCCCCEEEECCCCCCCCCC
>Mature Secondary Structure 
ASSKAAINLQDIFLNQVRKEHVPVTVYLINGFQLKGTVKGFDNFTVVLESESKQQLLIY
CCCCCEEEHHHHHHHHHHHCCCCEEEEEECCEEEEEEECCCCCEEEEEECCCCCEEEEE
KHAISTISPQKPVIFSGSEKDDKKEE
EEHHHCCCCCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA