Click here to switch to the map view.

The map label for this gene is secF [H]

Identifier: 20807645

GI number: 20807645

Start: 1185977

End: 1186888

Strand: Direct

Name: secF [H]

Synonym: TTE1189

Alternate gene names: 20807645

Gene position: 1185977-1186888 (Clockwise)

Preceding gene: 20807644

Following gene: 20807646

Centisome position: 44.1

GC content: 36.62

Gene sequence:

>912_bases
TTGAATGGTCACAGATTTCACATAGATGTCATTGGCAAGACAAAAATTTGGTTTACCATTTCGGGTATAATGATACTGAT
CGGCATAATAGCCATGTTTGTAAATGGCTTTAACTGGGGCATAGATTTTACTGGCGGAACCATAATGGAGTTTAAAATTG
GAAAGCCTTTTGATACTAAGGACATAATCAAAATTTTAAATGACTATAAAGTGAAGGACTATCAGATACAGAAAATTGGA
ACAAAGGGTGATCACGTCTCTATAAAGACAAGCCCTATCTCTGACCAGACTCGAATAGCAATAATAAAAGAGATTGAGAA
AAAGTACAATCTCACAGAAAGCGATCTTATAATGTCACAGCAAGTGGGCCCTTCTTTAGGGGCTGAAATAAGGTCAGGTA
TGATACTTGCGCTTGTTGTAGCCTCACTAGTAATGCTCACTTATTTAGGAATTAGATTCAATTTTGAAATGAGTTTAGCG
GCTGTAATAGGGCTACTTCATAACGTGTTTATACTCATTTCTGTGTACGCTGTTTTTAGAATAACCGTGGACTCACCTTT
TATTGCAGCTCTTTTGACAGTTTTTAGTTATTCTCTCCACGATACTATAGTCATTTTTGACAGGATTAGAGATAATCTTA
AGGTGATGAGAAGAGCTGACTATGCTGAAGTAGCCAATGTAAGTGTTAATCAAACCTTGGTAAGATCTATAAACGTTGTA
CTGACAGTGCTCATAATGCTTCTTTTGATGTACTTCTTGGGGCCTAAGGCTTTAAAAGATTTTGCTCTTCCACTTTTGAT
AGGAATTACATGGGGAGCTTATTCATCAATTTTTATCTCGACTCCGCTTTGGGTGCTCATTAAAAATAGAGAAAAGAGGA
AAAAAGCTTCTGTCAAGGCGGCTAAAGCTTAA

Upstream 100 bases:

>100_bases
ATTTACTGCTATAACTGTGACAAGATTCTTACTGCACGCGCTCCTTGAGATGGACCTTACAAGAAATGTCAAATTCTATG
GAGCATAGGAGGGAATTAGA

Downstream 100 bases:

>100_bases
AAAGGCTTATTACGAAATATGATAGCAGGATGACTCTTTTTTAAAAAAGAGCTCGTGCTGCTATATTTTTATTGAGGTGA
AAAAATGAGGATTCCTTTGT

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MNGHRFHIDVIGKTKIWFTISGIMILIGIIAMFVNGFNWGIDFTGGTIMEFKIGKPFDTKDIIKILNDYKVKDYQIQKIG
TKGDHVSIKTSPISDQTRIAIIKEIEKKYNLTESDLIMSQQVGPSLGAEIRSGMILALVVASLVMLTYLGIRFNFEMSLA
AVIGLLHNVFILISVYAVFRITVDSPFIAALLTVFSYSLHDTIVIFDRIRDNLKVMRRADYAEVANVSVNQTLVRSINVV
LTVLIMLLLMYFLGPKALKDFALPLLIGITWGAYSSIFISTPLWVLIKNREKRKKASVKAAKA

Sequences:

>Translated_303_residues
MNGHRFHIDVIGKTKIWFTISGIMILIGIIAMFVNGFNWGIDFTGGTIMEFKIGKPFDTKDIIKILNDYKVKDYQIQKIG
TKGDHVSIKTSPISDQTRIAIIKEIEKKYNLTESDLIMSQQVGPSLGAEIRSGMILALVVASLVMLTYLGIRFNFEMSLA
AVIGLLHNVFILISVYAVFRITVDSPFIAALLTVFSYSLHDTIVIFDRIRDNLKVMRRADYAEVANVSVNQTLVRSINVV
LTVLIMLLLMYFLGPKALKDFALPLLIGITWGAYSSIFISTPLWVLIKNREKRKKASVKAAKA
>Mature_303_residues
MNGHRFHIDVIGKTKIWFTISGIMILIGIIAMFVNGFNWGIDFTGGTIMEFKIGKPFDTKDIIKILNDYKVKDYQIQKIG
TKGDHVSIKTSPISDQTRIAIIKEIEKKYNLTESDLIMSQQVGPSLGAEIRSGMILALVVASLVMLTYLGIRFNFEMSLA
AVIGLLHNVFILISVYAVFRITVDSPFIAALLTVFSYSLHDTIVIFDRIRDNLKVMRRADYAEVANVSVNQTLVRSINVV
LTVLIMLLLMYFLGPKALKDFALPLLIGITWGAYSSIFISTPLWVLIKNREKRKKASVKAAKA

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=291, Percent_Identity=33.6769759450172, Blast_Score=172, Evalue=2e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 33967; Mature: 33967

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGHRFHIDVIGKTKIWFTISGIMILIGIIAMFVNGFNWGIDFTGGTIMEFKIGKPFDTK
CCCCEEEEEEEECEEEEEEHHHHHHHHHHHHHHHCCCCCCEECCCCEEEEEECCCCCCHH
DIIKILNDYKVKDYQIQKIGTKGDHVSIKTSPISDQTRIAIIKEIEKKYNLTESDLIMSQ
HHHHHHHCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
QVGPSLGAEIRSGMILALVVASLVMLTYLGIRFNFEMSLAAVIGLLHNVFILISVYAVFR
HCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHH
ITVDSPFIAALLTVFSYSLHDTIVIFDRIRDNLKVMRRADYAEVANVSVNQTLVRSINVV
EECCCHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHH
LTVLIMLLLMYFLGPKALKDFALPLLIGITWGAYSSIFISTPLWVLIKNREKRKKASVKA
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCCC
AKA
CCC
>Mature Secondary Structure
MNGHRFHIDVIGKTKIWFTISGIMILIGIIAMFVNGFNWGIDFTGGTIMEFKIGKPFDTK
CCCCEEEEEEEECEEEEEEHHHHHHHHHHHHHHHCCCCCCEECCCCEEEEEECCCCCCHH
DIIKILNDYKVKDYQIQKIGTKGDHVSIKTSPISDQTRIAIIKEIEKKYNLTESDLIMSQ
HHHHHHHCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
QVGPSLGAEIRSGMILALVVASLVMLTYLGIRFNFEMSLAAVIGLLHNVFILISVYAVFR
HCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHH
ITVDSPFIAALLTVFSYSLHDTIVIFDRIRDNLKVMRRADYAEVANVSVNQTLVRSINVV
EECCCHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHH
LTVLIMLLLMYFLGPKALKDFALPLLIGITWGAYSSIFISTPLWVLIKNREKRKKASVKA
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCCC
AKA
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]