Click here to switch to the map view.

The map label for this gene is OppA6 [H]

Identifier: 20807106

GI number: 20807106

Start: 617095

End: 618738

Strand: Direct

Name: OppA6 [H]

Synonym: TTE0611

Alternate gene names: 20807106

Gene position: 617095-618738 (Clockwise)

Preceding gene: 20807104

Following gene: 20807107

Centisome position: 22.95

GC content: 41.06

Gene sequence:

>1644_bases
ATGTTAAAGCACAAGAGACTTGTAGTTTTACTGCTTTCAGTAGTTTTAGTGTTGGGTGCATTGCTAGCCGGTTGCAGCAG
TCAGAGCAAAACTGCCACCACATCTCAGGGACAAAGCGAGCAGGTACTGAATCTAAACCTGGGTGAGGAGCCCCCAACAT
TGGACCCTCAAAAGGCTACAGATGAAGTTTCTATCACAGTTTTGAATGCTGTATTAGAAGGGCTTGTAAGGTATAACAAA
GATGGAAAAATTGAGAAAGGCTCAGGGCTTGCAAAAGACTGGAAGATATCTGATGATGGGTTAACTTACACCTTTTATTT
GAAAGATGCTAAATGGAGTGACGGCAATCCTATTACAGCTTATGACTTTGAATACGCTTGGAAAAGAGCATTGGATCCAA
AAACAGGCTCACAATACGCTTATCAGCTCTACTACATCAAGGGGGCAGAAGAGTATAACTCCGGCAAAGGAAGCGCTGAC
CAAGTAGGGATTAAGGCATTGGATGATAAGACTTTGCAGGTAACATTAAAAGCACCAGCACCTCAGTTTTTAGGACTTAC
TTCTTTTGTAACTTATTTGCCGCTTGAGAAGTCTGTTTATGAGAAATACGGCGACAAAGTAGGTTCTGACCCAAGCACAA
TGGTATTTAGCGGTCCATTTATTATAAAAGAATGGAACCACGAACAAAACATCGTCTTAGAGAAAAATCCAAACTACTGG
GACAAGGACAATGTAAAACTCGACAAAATTAATTTCAGCATGATTAAGGATAACAACTCACTAGTTCAGAACTACGACAC
AGGAGCTTTAGATTCAATTTTTATACCAGGAGATTATATAGACAAGTACAAAGATTCTCCAGAGTTCCACACTTATGCAC
TAGCAACAGTTTGGTATCTGCAGTTTAACAACAAAGATAAGATATTCAAAAATGCAAATATAAGGAAGGCCTTCACTCTT
GCTGTAAATAGAGAGTTGTTTGTAAAAGAAGTCATGAAAAATGGGTCCATTCCTGCAGAGGCAGTAGTACCTCCAGGTAT
TCCAGGTTACAATGGAGATTTTAGAAGTGAGGCAGGTCCTGGCTACTTCAAGGACAATGATGTAGCTCAAGCCAAAGAAT
ATCTCCAGAAAGGGCTCCAGGAACTTGGGCTTTCTAAACTTCCCACAATTAAGTTCTTGACAGGAGACAGCGACACTGCT
AAAAAGTATTCAGTGGCTTTACAACAGATGTGGAATCAAGCCCTTGGAGTGCAAGTGGAGATTCAGAACGTAGCATTTAA
AGTAAGACTTGACATGATGGACAGAGGAGATTATCAGATAGTGCTGGCTGGTTGGGGTGCTGACTACAACGATCCGATGA
CTTTCCTGGATATGTGGGAAACCAACAATGGCAACAATACAGCTTTCTACAGCAATCCAGAGTATGACAAATTGATAGAG
CAGGCAAAAGTAAATGGCGATCCTAAGTCAAGAGTGGAAGAAATGATTCAGGCAGAAAAAATACTCATGGAGGATATGCC
AATCGGTCCACTCTGGTTCCAGGCAAGAGCTTATGTAGTAAAGCCTTATGTAAAGAACCTCTACTTCCCTGCTTTTGGAC
CTGACTGGGAGATGAAGTGGACCTATATAGAAGGCAAAAAATAA

Upstream 100 bases:

>100_bases
TACGATAATTTTACACTATGTGCTGGGGGAATAGTCGAGGAGAGGGACATAGCTTTAGAGGGGGGTCAAGTCATTCTAAA
TTTTAAAGGAGGAGAAGGGT

Downstream 100 bases:

>100_bases
TGAATAGTTTCTAGAATACGCGAATATATATGGCGTAAAGCCATATATATTCGCTGTATATTTAAATTAAACGTCTTTGG
AGGTGTAAAGATTTGCTGCG

Product: ABC-type dipeptide/oligopeptide/nickel transport systems, periplasmic components

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: Stage 0 sporulation protein KA [H]

Number of amino acids: Translated: 547; Mature: 547

Protein sequence:

>547_residues
MLKHKRLVVLLLSVVLVLGALLAGCSSQSKTATTSQGQSEQVLNLNLGEEPPTLDPQKATDEVSITVLNAVLEGLVRYNK
DGKIEKGSGLAKDWKISDDGLTYTFYLKDAKWSDGNPITAYDFEYAWKRALDPKTGSQYAYQLYYIKGAEEYNSGKGSAD
QVGIKALDDKTLQVTLKAPAPQFLGLTSFVTYLPLEKSVYEKYGDKVGSDPSTMVFSGPFIIKEWNHEQNIVLEKNPNYW
DKDNVKLDKINFSMIKDNNSLVQNYDTGALDSIFIPGDYIDKYKDSPEFHTYALATVWYLQFNNKDKIFKNANIRKAFTL
AVNRELFVKEVMKNGSIPAEAVVPPGIPGYNGDFRSEAGPGYFKDNDVAQAKEYLQKGLQELGLSKLPTIKFLTGDSDTA
KKYSVALQQMWNQALGVQVEIQNVAFKVRLDMMDRGDYQIVLAGWGADYNDPMTFLDMWETNNGNNTAFYSNPEYDKLIE
QAKVNGDPKSRVEEMIQAEKILMEDMPIGPLWFQARAYVVKPYVKNLYFPAFGPDWEMKWTYIEGKK

Sequences:

>Translated_547_residues
MLKHKRLVVLLLSVVLVLGALLAGCSSQSKTATTSQGQSEQVLNLNLGEEPPTLDPQKATDEVSITVLNAVLEGLVRYNK
DGKIEKGSGLAKDWKISDDGLTYTFYLKDAKWSDGNPITAYDFEYAWKRALDPKTGSQYAYQLYYIKGAEEYNSGKGSAD
QVGIKALDDKTLQVTLKAPAPQFLGLTSFVTYLPLEKSVYEKYGDKVGSDPSTMVFSGPFIIKEWNHEQNIVLEKNPNYW
DKDNVKLDKINFSMIKDNNSLVQNYDTGALDSIFIPGDYIDKYKDSPEFHTYALATVWYLQFNNKDKIFKNANIRKAFTL
AVNRELFVKEVMKNGSIPAEAVVPPGIPGYNGDFRSEAGPGYFKDNDVAQAKEYLQKGLQELGLSKLPTIKFLTGDSDTA
KKYSVALQQMWNQALGVQVEIQNVAFKVRLDMMDRGDYQIVLAGWGADYNDPMTFLDMWETNNGNNTAFYSNPEYDKLIE
QAKVNGDPKSRVEEMIQAEKILMEDMPIGPLWFQARAYVVKPYVKNLYFPAFGPDWEMKWTYIEGKK
>Mature_547_residues
MLKHKRLVVLLLSVVLVLGALLAGCSSQSKTATTSQGQSEQVLNLNLGEEPPTLDPQKATDEVSITVLNAVLEGLVRYNK
DGKIEKGSGLAKDWKISDDGLTYTFYLKDAKWSDGNPITAYDFEYAWKRALDPKTGSQYAYQLYYIKGAEEYNSGKGSAD
QVGIKALDDKTLQVTLKAPAPQFLGLTSFVTYLPLEKSVYEKYGDKVGSDPSTMVFSGPFIIKEWNHEQNIVLEKNPNYW
DKDNVKLDKINFSMIKDNNSLVQNYDTGALDSIFIPGDYIDKYKDSPEFHTYALATVWYLQFNNKDKIFKNANIRKAFTL
AVNRELFVKEVMKNGSIPAEAVVPPGIPGYNGDFRSEAGPGYFKDNDVAQAKEYLQKGLQELGLSKLPTIKFLTGDSDTA
KKYSVALQQMWNQALGVQVEIQNVAFKVRLDMMDRGDYQIVLAGWGADYNDPMTFLDMWETNNGNNTAFYSNPEYDKLIE
QAKVNGDPKSRVEEMIQAEKILMEDMPIGPLWFQARAYVVKPYVKNLYFPAFGPDWEMKWTYIEGKK

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, It binds peptides up to five amino acids long with high affinity. Also required for sporulation and competence [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787495, Length=518, Percent_Identity=32.8185328185328, Blast_Score=261, Evalue=6e-71,
Organism=Escherichia coli, GI87081878, Length=534, Percent_Identity=32.2097378277154, Blast_Score=260, Evalue=2e-70,
Organism=Escherichia coli, GI1789397, Length=533, Percent_Identity=30.7692307692308, Blast_Score=248, Evalue=8e-67,
Organism=Escherichia coli, GI1787762, Length=481, Percent_Identity=27.4428274428274, Blast_Score=143, Evalue=3e-35,
Organism=Escherichia coli, GI1787052, Length=539, Percent_Identity=26.1595547309833, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1789966, Length=553, Percent_Identity=25.3164556962025, Blast_Score=125, Evalue=8e-30,
Organism=Escherichia coli, GI1787551, Length=547, Percent_Identity=20.2925045703839, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1789887, Length=295, Percent_Identity=27.4576271186441, Blast_Score=81, Evalue=2e-16,

Paralogues:

None

Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 61726; Mature: 61726

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKHKRLVVLLLSVVLVLGALLAGCSSQSKTATTSQGQSEQVLNLNLGEEPPTLDPQKAT
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
DEVSITVLNAVLEGLVRYNKDGKIEKGSGLAKDWKISDDGLTYTFYLKDAKWSDGNPITA
CHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCEECCCCEEEEEEEEECCCCCCCCEEE
YDFEYAWKRALDPKTGSQYAYQLYYIKGAEEYNSGKGSADQVGIKALDDKTLQVTLKAPA
EEHHHHHHHCCCCCCCCCEEEEEEEEECCHHCCCCCCCCHHCCEEEECCCEEEEEEECCC
PQFLGLTSFVTYLPLEKSVYEKYGDKVGSDPSTMVFSGPFIIKEWNHEQNIVLEKNPNYW
CHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCEEEEECCCCCCEEEECCCCCC
DKDNVKLDKINFSMIKDNNSLVQNYDTGALDSIFIPGDYIDKYKDSPEFHTYALATVWYL
CCCCEEEEEEEEEEEECCCCCEECCCCCCCCEEEECCHHHHHCCCCCCCEEEEEEEEEEE
QFNNKDKIFKNANIRKAFTLAVNRELFVKEVMKNGSIPAEAVVPPGIPGYNGDFRSEAGP
EECCCCCEEECCCCCEEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
GYFKDNDVAQAKEYLQKGLQELGLSKLPTIKFLTGDSDTAKKYSVALQQMWNQALGVQVE
CCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCEEEE
IQNVAFKVRLDMMDRGDYQIVLAGWGADYNDPMTFLDMWETNNGNNTAFYSNPEYDKLIE
EEEEEEEEEEEEECCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCEEEECCCCHHHHHH
QAKVNGDPKSRVEEMIQAEKILMEDMPIGPLWFQARAYVVKPYVKNLYFPAFGPDWEMKW
HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHCEEEEEEHHHHHEECCCCCCCCCEEE
TYIEGKK
EEECCCC
>Mature Secondary Structure
MLKHKRLVVLLLSVVLVLGALLAGCSSQSKTATTSQGQSEQVLNLNLGEEPPTLDPQKAT
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
DEVSITVLNAVLEGLVRYNKDGKIEKGSGLAKDWKISDDGLTYTFYLKDAKWSDGNPITA
CHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCEECCCCEEEEEEEEECCCCCCCCEEE
YDFEYAWKRALDPKTGSQYAYQLYYIKGAEEYNSGKGSADQVGIKALDDKTLQVTLKAPA
EEHHHHHHHCCCCCCCCCEEEEEEEEECCHHCCCCCCCCHHCCEEEECCCEEEEEEECCC
PQFLGLTSFVTYLPLEKSVYEKYGDKVGSDPSTMVFSGPFIIKEWNHEQNIVLEKNPNYW
CHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCEEEEECCCCCCEEEECCCCCC
DKDNVKLDKINFSMIKDNNSLVQNYDTGALDSIFIPGDYIDKYKDSPEFHTYALATVWYL
CCCCEEEEEEEEEEEECCCCCEECCCCCCCCEEEECCHHHHHCCCCCCCEEEEEEEEEEE
QFNNKDKIFKNANIRKAFTLAVNRELFVKEVMKNGSIPAEAVVPPGIPGYNGDFRSEAGP
EECCCCCEEECCCCCEEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
GYFKDNDVAQAKEYLQKGLQELGLSKLPTIKFLTGDSDTAKKYSVALQQMWNQALGVQVE
CCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCEEEE
IQNVAFKVRLDMMDRGDYQIVLAGWGADYNDPMTFLDMWETNNGNNTAFYSNPEYDKLIE
EEEEEEEEEEEEECCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCEEEECCCCHHHHHH
QAKVNGDPKSRVEEMIQAEKILMEDMPIGPLWFQARAYVVKPYVKNLYFPAFGPDWEMKW
HHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHCEEEEEEHHHHHEECCCCCCCCCEEE
TYIEGKK
EEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1901616; 1899858; 9384377 [H]